Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0229 Ceratophyllum demersum HOM05D000563 ORTHO05D006573 1.1e-47 193.0 94 100.0
CDE11G0885 Ceratophyllum demersum HOM05D000563 ORTHO05D006573 1.1e-47 193.0 94 100.0
CDE05G0374 Ceratophyllum demersum HOM05D000563 ORTHO05D006573 4.0e-47 191.0 94 97.9
HPP92_004165 Vanilla planifolia HOM05D000563 ORTHO05D006573 2.2e-45 185.3 94 93.6
HanXRQChr15g0466481 Helianthus annuus HOM05D000563 ORTHO05D006573 6.4e-45 183.7 94 92.6
SEGI_10645 Sequoiadendron giganteum HOM05D000563 ORTHO05D006573 8.4e-45 183.3 94 92.6
Ciclev10023059m.g Citrus clementina HOM05D000563 ORTHO05D006573 5.4e-44 180.6 94 89.4
MELO3C028853.2 Cucumis melo HOM05D000563 ORTHO05D006573 5.4e-44 180.6 94 90.4
MBI17_g11989_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 5.4e-44 180.6 94 91.5
CARHR002640 Cardamine hirsuta HOM05D000563 ORTHO05D006573 7.1e-44 180.3 94 89.4
CsaV3_7G031130 Cucumis sativus L. HOM05D000563 ORTHO05D006573 7.1e-44 180.3 94 89.4
MBI19_g06754_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 7.1e-44 180.3 94 91.5
MBI19_g44975_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 7.1e-44 180.3 94 91.5
Potri.003G014900 Populus trichocarpa HOM05D000563 ORTHO05D006573 7.1e-44 180.3 94 89.4
Potri.004G219000 Populus trichocarpa HOM05D000563 ORTHO05D006573 7.1e-44 180.3 94 89.4
Pp3c2_19710 Physcomitrium patens HOM05D000563 ORTHO05D006573 9.3e-44 179.9 94 90.4
Prupe.4G147700 Prunus persica HOM05D000563 ORTHO05D006573 9.3e-44 179.9 94 89.4
Actinidia24875 Actinidia chinensis HOM05D000563 ORTHO05D006573 1.2e-43 179.5 94 89.4
CSS0039726 Camellia sinensis var. sinensis HOM05D000563 ORTHO05D006573 1.2e-43 179.5 94 89.4
Duzib133G0114 Durio zibethinus HOM05D000563 ORTHO05D006573 1.2e-43 179.5 94 89.4
Eucgr.K03403 Eucalyptus grandis HOM05D000563 ORTHO05D006573 1.2e-43 179.5 94 89.4
Gohir.D08G079000 Gossypium hirsutum HOM05D000563 ORTHO05D006573 1.2e-43 179.5 94 89.4
Gorai.004G083500 Gossypium raimondii HOM05D000563 ORTHO05D006573 1.2e-43 179.5 94 89.4
Manes.01G210300 Manihot esculenta HOM05D000563 ORTHO05D006573 1.2e-43 179.5 94 89.4
Manes.05G073100 Manihot esculenta HOM05D000563 ORTHO05D006573 1.2e-43 179.5 94 89.4
Nn4g26163 Nelumbo nucifera HOM05D000563 ORTHO05D006573 1.2e-43 179.5 93 90.3
PGR044G0879 Punica granatum HOM05D000563 ORTHO05D006573 1.2e-43 179.5 94 89.4
Sabra03G0008000 Salix brachista HOM05D000563 ORTHO05D006573 1.2e-43 179.5 93 89.2
THA.LOC104801217 Tarenaya hassleriana HOM05D000563 ORTHO05D006573 1.2e-43 179.5 94 88.3
Thecc.01G284300 Theobroma cacao HOM05D000563 ORTHO05D006573 1.2e-43 179.5 94 89.4
TWI23G1003 Tripterygium wilfordii HOM05D000563 ORTHO05D006573 1.2e-43 179.5 94 89.4
Atru.chr5.1355 Acer truncatum HOM05D000563 ORTHO05D006573 1.6e-43 179.1 93 89.2
AagrBONN_evm.TU.Sc2ySwM_344.5103 Anthoceros agrestis HOM05D000563 ORTHO05D006573 1.6e-43 179.1 94 90.4
MELO3C023545.2 Cucumis melo HOM05D000563 ORTHO05D006573 1.6e-43 179.1 94 88.3
PSO210G0485 Papaver somniferum HOM05D000563 ORTHO05D006573 1.6e-43 179.1 94 88.3
PSO832G0267 Papaver somniferum HOM05D000563 ORTHO05D006573 1.6e-43 179.1 94 88.3
CANSAT56G4364 Cannabis sativa HOM05D000563 ORTHO05D006573 2.1e-43 178.7 94 88.3
CARHR002690 Cardamine hirsuta HOM05D000563 ORTHO05D006573 2.1e-43 178.7 94 88.3
FvH4_3g16480 Fragaria vesca HOM05D000563 ORTHO05D006573 2.1e-43 178.7 94 88.3
FAN11G3431 Fragaria x ananassa HOM05D000563 ORTHO05D006573 2.1e-43 178.7 94 88.3
FAN16G1803 Fragaria x ananassa HOM05D000563 ORTHO05D006573 2.1e-43 178.7 94 88.3
FAN21G1624 Fragaria x ananassa HOM05D000563 ORTHO05D006573 2.1e-43 178.7 94 88.3
Lalb_Chr02g0142891 Lupinus albus HOM05D000563 ORTHO05D006573 2.1e-43 178.7 94 89.4
Lalb_Chr21g0306571 Lupinus albus HOM05D000563 ORTHO05D006573 2.1e-43 178.7 94 89.4
RcHm_v2.0_Chr5g0027471 Rosa chinensis HOM05D000563 ORTHO05D006573 2.1e-43 178.7 94 88.3
BcaC05g24542 Brassica carinata HOM05D000563 ORTHO05D006573 2.7e-43 178.3 94 88.3
BcaC05g24543 Brassica carinata HOM05D000563 ORTHO05D006573 2.7e-43 178.3 94 88.3
Carub.0001s0244 Capsella rubella HOM05D000563 ORTHO05D006573 2.7e-43 178.3 94 88.3
Thhalv10009199m.g Eutrema salsugineum HOM05D000563 ORTHO05D006573 2.7e-43 178.3 94 88.3
Gohir.A08G069900 Gossypium hirsutum HOM05D000563 ORTHO05D006573 2.7e-43 178.3 94 88.3
Mapoly0002s0343 Marchantia polymorpha HOM05D000563 ORTHO05D006573 2.7e-43 178.3 92 91.3
Os08g0154700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D006573 2.7e-43 178.3 94 91.5
Sp1g02320 Schrenkiella parvula HOM05D000563 ORTHO05D006573 2.7e-43 178.3 94 88.3
Zm00001eb172640 Zea mays HOM05D000563 ORTHO05D006573 2.7e-43 178.3 94 91.5
CiPaw.07G094800 Carya illinoinensis HOM05D000563 ORTHO05D006573 3.5e-43 177.9 94 88.3
ClCG09G008910 Citrullus lanatus HOM05D000563 ORTHO05D006573 3.5e-43 177.9 93 89.2
Dinv11258 Davidia involucrata HOM05D000563 ORTHO05D006573 3.5e-43 177.9 94 88.3
HanXRQChr01g0002411 Helianthus annuus HOM05D000563 ORTHO05D006573 3.5e-43 177.9 94 88.3
MD05G1209800 Malus domestica HOM05D000563 ORTHO05D006573 3.5e-43 177.9 94 87.2
MD10G1196100 Malus domestica HOM05D000563 ORTHO05D006573 3.5e-43 177.9 94 87.2
Medtr7g104700 Medicago truncatula HOM05D000563 ORTHO05D006573 3.5e-43 177.9 94 88.3
Phvul.001G148500 Phaseolus vulgaris HOM05D000563 ORTHO05D006573 3.5e-43 177.9 94 88.3
Psat0s3362g0080 Pisum sativum HOM05D000563 ORTHO05D006573 3.5e-43 177.9 94 88.3
GSVIVG01011077001 Vitis vinifera HOM05D000563 ORTHO05D006573 3.5e-43 177.9 94 88.3
Zm00001eb416130 Zea mays HOM05D000563 ORTHO05D006573 3.5e-43 177.9 94 90.4
Aqoxy2G03235 Aquilegia oxysepala HOM05D000563 ORTHO05D006573 4.6e-43 177.6 94 88.3
arahy.Tifrunner.gnm1.ann1.VC9ZTT Arachis hypogaea HOM05D000563 ORTHO05D006573 4.6e-43 177.6 94 87.2
CiPaw.08G103000 Carya illinoinensis HOM05D000563 ORTHO05D006573 4.6e-43 177.6 94 87.2
Ca_08564_v3 Cicer arietinum L. HOM05D000563 ORTHO05D006573 4.6e-43 177.6 94 87.2
Migut.D00260 Erythranthe guttata HOM05D000563 ORTHO05D006573 4.6e-43 177.6 94 87.2
QL12p022805 Quercus lobata HOM05D000563 ORTHO05D006573 4.6e-43 177.6 93 88.2
Nitab4.5_0006874g0030 Nicotiana tabacum HOM05D000563 ORTHO05D006573 6.0e-43 177.2 94 88.3
Solyc09g072970.3 Solanum lycopersicum HOM05D000563 ORTHO05D006573 6.0e-43 177.2 94 88.3
PGSC0003DMG400003836 Solanum tuberosum HOM05D000563 ORTHO05D006573 6.0e-43 177.2 94 88.3
TWI59G0344 Tripterygium wilfordii HOM05D000563 ORTHO05D006573 6.0e-43 177.2 94 88.3
A10p01870 Brassica napus HOM05D000563 ORTHO05D006573 7.8e-43 176.8 93 88.2
BolC5t28963H Brassica oleracea HOM05D000563 ORTHO05D006573 7.8e-43 176.8 94 87.2
BraA10t42461Z Brassica rapa HOM05D000563 ORTHO05D006573 7.8e-43 176.8 93 88.2
Medtr7g094500 Medicago truncatula HOM05D000563 ORTHO05D006573 7.8e-43 176.8 94 87.2
Cfa006100 Carpinus fangiana HOM05D000563 ORTHO05D000536 1.0e-42 176.4 93 88.2
Haze_04755 Corylus avellana HOM05D000563 ORTHO05D000536 1.0e-42 176.4 93 88.2
Lsat_1_v5_gn_5_187481 Lactuca sativa HOM05D000563 ORTHO05D006573 1.0e-42 176.4 92 89.1
Peaxi162Scf00980g00016 Petunia axillaris HOM05D000563 ORTHO05D006573 1.0e-42 176.4 93 88.2
Solyc06g084350.3 Solanum lycopersicum HOM05D000563 ORTHO05D006573 1.0e-42 176.4 94 87.2
Sopen06g035740 Solanum pennellii HOM05D000563 ORTHO05D006573 1.0e-42 176.4 94 87.2
BcaB03g16569 Brassica carinata HOM05D000563 ORTHO05D006573 1.3e-42 176.0 94 87.2
Duzib138G0853 Durio zibethinus HOM05D000563 ORTHO05D006573 1.3e-42 176.0 94 88.3
Duzib211G0084 Durio zibethinus HOM05D000563 ORTHO05D006573 1.3e-42 176.0 93 88.2
Sopen09g028780 Solanum pennellii HOM05D000563 ORTHO05D006573 1.3e-42 176.0 94 87.2
SGA_v2.0_scaffold11G05791 Striga asiatica HOM05D000563 ORTHO05D000536 1.3e-42 176.0 93 87.1
Ah.02g112280 Amaranthus hybridus HOM05D000563 ORTHO05D006573 1.7e-42 175.6 94 87.2
CAN.G1679.5 Capsicum annuum HOM05D000563 ORTHO05D006573 1.7e-42 175.6 93 88.2
Cc01_g19800 Coffea canephora HOM05D000563 ORTHO05D006573 1.7e-42 175.6 93 88.2
ECA248G1345 Erigeron canadensis HOM05D000563 ORTHO05D006573 1.7e-42 175.6 94 86.2
vmacro14940 Vaccinium macrocarpon HOM05D000563 ORTHO05D006573 1.7e-42 175.6 93 88.2
Aa31LG1G9230 Aethionema arabicum HOM05D000280 ORTHO05D003998 2.3e-42 175.3 93 87.1
AL1G12840 Arabidopsis lyrata HOM05D000563 ORTHO05D006573 2.3e-42 175.3 94 87.2
AT1G03330 Arabidopsis thaliana HOM05D000563 ORTHO05D006573 2.3e-42 175.3 94 87.2
FAN25G0039 Fragaria x ananassa HOM05D000563 ORTHO05D006573 2.3e-42 175.3 93 87.1
Nn1g02139 Nelumbo nucifera HOM05D000563 ORTHO05D006573 2.3e-42 175.3 94 87.2
Nitab4.5_0007767g0050 Nicotiana tabacum HOM05D000563 ORTHO05D006573 2.3e-42 175.3 94 86.2
Hma1.2p1_0628F.1_g191850 Hydrangea macrophylla HOM05D000563 ORTHO05D006573 3.0e-42 174.9 91 89.0
BcaC07g36971 Brassica carinata HOM05D000563 ORTHO05D006573 3.9e-42 174.5 94 86.2
A08p37390 Brassica napus HOM05D000563 ORTHO05D006573 3.9e-42 174.5 94 86.2
C08p00530 Brassica napus HOM05D000563 ORTHO05D006573 3.9e-42 174.5 94 86.2
BolC8t46853H Brassica oleracea HOM05D000563 ORTHO05D006573 3.9e-42 174.5 94 86.2
BraA08t35636Z Brassica rapa HOM05D000563 ORTHO05D006573 3.9e-42 174.5 94 86.2
AUR62011805 Chenopodium quinoa HOM05D000563 ORTHO05D006573 3.9e-42 174.5 94 86.2
AUR62024651 Chenopodium quinoa HOM05D000563 ORTHO05D006573 3.9e-42 174.5 94 86.2
TAR365G0146 Trochodendron aralioides HOM05D000563 ORTHO05D006573 3.9e-42 174.5 94 86.2
Hund22131 Selenicereus undatus HOM05D000563 ORTHO05D006573 5.1e-42 174.1 94 86.2
ATR0626G009 Amborella trichopoda HOM05D000563 ORTHO05D006573 6.6e-42 173.7 94 86.2
Glyma.03G150900 Glycine max HOM05D000563 ORTHO05D006573 1.5e-41 172.6 94 86.2
Glyma.19G153500 Glycine max HOM05D000563 ORTHO05D006573 1.5e-41 172.6 94 86.2
Gorai.007G134200 Gossypium raimondii HOM05D000563 ORTHO05D006573 1.5e-41 172.6 94 86.2
unitig_26.g10157 Utricularia gibba HOM05D000563 ORTHO05D006573 1.5e-41 172.6 93 86.0
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 1.9e-41 172.2 93 84.9
Gohir.D11G125000 Gossypium hirsutum HOM05D000563 ORTHO05D006573 7.3e-41 170.2 91 86.8
SMO146G0171 Selaginella moellendorffii HOM05D000563 ORTHO05D006573 9.6e-41 169.9 94 86.2
Nitab4.5_0001323g0030 Nicotiana tabacum HOM05D000563 ORTHO05D006573 1.3e-40 169.5 91 86.8
arahy.Tifrunner.gnm1.ann1.A338HQ Arachis hypogaea HOM05D000563 ORTHO05D006573 2.6e-38 161.8 86 86.0
Cre10.g441950 Chlamydomonas reinhardtii HOM05D000563 ORTHO05D006573 4.5e-38 161.0 94 81.9
PGSC0003DMG400020045 Solanum tuberosum HOM05D000563 ORTHO05D006573 2.2e-37 158.7 85 85.9
Nitab4.5_0002093g0040 Nicotiana tabacum HOM05D000563 ORTHO05D006573 6.4e-37 157.1 86 83.7
SGA_v2.0_scaffold1G00443 Striga asiatica HOM05D000563 ORTHO05D003998 8.4e-37 156.8 103 71.8
Sabra01G0166100 Salix brachista HOM05D000563 ORTHO05D006573 1.2e-35 152.9 154 54.5
EL10Ac2g04686 Beta vulgaris HOM05D000563 ORTHO05D006573 3.0e-34 148.3 152 53.9
PRCOL_00001823 Prasinoderma coloniale HOM05D000563 ORTHO05D006573 1.1e-33 146.4 92 70.7
TPR.G37604 Trifolium pratense HOM05D000563 ORTHO05D006573 8.1e-32 140.2 134 57.5
Ah.11g049240 Amaranthus hybridus HOM05D000563 ORTHO05D006573 2.0e-30 135.6 184 44.0
Cpa.g.sc50.145 Carica papaya HOM05D000563 ORTHO05D000536 1.0e-26 123.2 65 87.7
TPR.G29312 Trifolium pratense HOM05D000563 ORTHO05D006573 3.8e-21 104.8 70 70.0
Sed0000117 Sechium edule HOM05D000563 ORTHO05D006573 2.5e-20 102.1 55 85.5
TPR.G20367 Trifolium pratense HOM05D000563 ORTHO05D006573 3.2e-20 101.7 54 87.0
Ca_08598_v3 Cicer arietinum L. HOM05D000563 ORTHO05D006573 4.2e-20 101.3 56 82.1
DCAR_018402 Daucus carota HOM05D000563 ORTHO05D006573 7.1e-20 100.5 54 85.2
SalBow6G0934 Salvia bowleyana HOM05D000563 ORTHO05D006573 7.1e-20 100.5 54 85.2
TAR362G0386 Trochodendron aralioides HOM05D000563 ORTHO05D006573 2.1e-19 99.0 54 83.3
Rhsim01G0276800 Rhododendron simsii HOM05D000563 ORTHO05D000536 2.7e-19 98.6 53 84.9
SalBow4G1726 Salvia bowleyana HOM05D000563 ORTHO05D006573 3.9e-18 94.7 83 55.4
AUR62041552 Chenopodium quinoa HOM05D000563 ORTHO05D006573 2.8e-16 88.6 54 75.9
Oeu011172.1 Olea europaea HOM05D000563 ORTHO05D006573 4.1e-15 84.7 40 92.5
CSS0020898 Camellia sinensis var. sinensis HOM05D000563 ORTHO05D006573 9.0e-15 83.6 40 95.0
MBI17_g11991_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 1.2e-14 83.2 43 88.4
MELO3C029155.2 Cucumis melo HOM05D000563 ORTHO05D006573 2.6e-14 82.0 43 86.0
Actinidia24317 Actinidia chinensis HOM05D000563 ORTHO05D006573 4.5e-14 81.3 40 92.5
BcaB01g01720 Brassica carinata HOM05D005272 ORTHO05D006573 2.9e-13 78.6 47 83.0
MBI17_g11992_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 2.9e-13 78.6 43 81.4
Gohir.A11G120250 Gossypium hirsutum HOM05D000563 ORTHO05D006573 1.3e-08 63.2 34 85.3
Pp3c11_10290 Physcomitrium patens HOM05D021114 ORTHO05D018332 2.6e-06 55.5 70 42.9


User provided reference genes

Program Settings