Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G4364 Cannabis sativa HOM05D000563 ORTHO05D006573 1.8e-47 192.2 94 100.0
FvH4_3g16480 Fragaria vesca HOM05D000563 ORTHO05D006573 4.0e-47 191.0 94 98.9
FAN11G3431 Fragaria x ananassa HOM05D000563 ORTHO05D006573 4.0e-47 191.0 94 98.9
FAN16G1803 Fragaria x ananassa HOM05D000563 ORTHO05D006573 4.0e-47 191.0 94 98.9
FAN21G1624 Fragaria x ananassa HOM05D000563 ORTHO05D006573 4.0e-47 191.0 94 98.9
RcHm_v2.0_Chr5g0027471 Rosa chinensis HOM05D000563 ORTHO05D006573 4.0e-47 191.0 94 98.9
MD05G1209800 Malus domestica HOM05D000563 ORTHO05D006573 6.9e-47 190.3 94 97.9
MD10G1196100 Malus domestica HOM05D000563 ORTHO05D006573 6.9e-47 190.3 94 97.9
arahy.Tifrunner.gnm1.ann1.VC9ZTT Arachis hypogaea HOM05D000563 ORTHO05D006573 9.0e-47 189.9 94 97.9
CiPaw.08G103000 Carya illinoinensis HOM05D000563 ORTHO05D006573 9.0e-47 189.9 94 97.9
Ca_08564_v3 Cicer arietinum L. HOM05D000563 ORTHO05D006573 9.0e-47 189.9 94 97.9
Migut.D00260 Erythranthe guttata HOM05D000563 ORTHO05D006573 9.0e-47 189.9 94 97.9
CiPaw.07G094800 Carya illinoinensis HOM05D000563 ORTHO05D006573 1.2e-46 189.5 94 96.8
Dinv11258 Davidia involucrata HOM05D000563 ORTHO05D006573 1.2e-46 189.5 94 96.8
Medtr7g104700 Medicago truncatula HOM05D000563 ORTHO05D006573 1.2e-46 189.5 94 96.8
Phvul.001G148500 Phaseolus vulgaris HOM05D000563 ORTHO05D006573 1.2e-46 189.5 94 96.8
Psat0s3362g0080 Pisum sativum HOM05D000563 ORTHO05D006573 1.2e-46 189.5 94 96.8
Prupe.4G147700 Prunus persica HOM05D000563 ORTHO05D006573 1.2e-46 189.5 94 97.9
GSVIVG01011077001 Vitis vinifera HOM05D000563 ORTHO05D006573 1.2e-46 189.5 94 96.8
QL12p022805 Quercus lobata HOM05D000563 ORTHO05D006573 1.5e-46 189.1 93 96.8
MELO3C023545.2 Cucumis melo HOM05D000563 ORTHO05D006573 2.0e-46 188.7 94 96.8
Lalb_Chr02g0142891 Lupinus albus HOM05D000563 ORTHO05D006573 2.0e-46 188.7 94 95.7
Lalb_Chr21g0306571 Lupinus albus HOM05D000563 ORTHO05D006573 2.0e-46 188.7 94 95.7
PSO210G0485 Papaver somniferum HOM05D000563 ORTHO05D006573 2.0e-46 188.7 94 96.8
PSO832G0267 Papaver somniferum HOM05D000563 ORTHO05D006573 2.0e-46 188.7 94 96.8
Actinidia24875 Actinidia chinensis HOM05D000563 ORTHO05D006573 2.6e-46 188.3 94 95.7
CSS0039726 Camellia sinensis var. sinensis HOM05D000563 ORTHO05D006573 2.6e-46 188.3 94 95.7
Duzib133G0114 Durio zibethinus HOM05D000563 ORTHO05D006573 2.6e-46 188.3 94 95.7
Eucgr.K03403 Eucalyptus grandis HOM05D000563 ORTHO05D006573 2.6e-46 188.3 94 95.7
Gohir.D08G079000 Gossypium hirsutum HOM05D000563 ORTHO05D006573 2.6e-46 188.3 94 95.7
Gorai.004G083500 Gossypium raimondii HOM05D000563 ORTHO05D006573 2.6e-46 188.3 94 95.7
Manes.01G210300 Manihot esculenta HOM05D000563 ORTHO05D006573 2.6e-46 188.3 94 95.7
Manes.05G073100 Manihot esculenta HOM05D000563 ORTHO05D006573 2.6e-46 188.3 94 95.7
Medtr7g094500 Medicago truncatula HOM05D000563 ORTHO05D006573 2.6e-46 188.3 94 95.7
PGR044G0879 Punica granatum HOM05D000563 ORTHO05D006573 2.6e-46 188.3 94 95.7
SGA_v2.0_scaffold11G05791 Striga asiatica HOM05D000563 ORTHO05D000536 2.6e-46 188.3 93 97.8
Thecc.01G284300 Theobroma cacao HOM05D000563 ORTHO05D006573 2.6e-46 188.3 94 95.7
TWI23G1003 Tripterygium wilfordii HOM05D000563 ORTHO05D006573 2.6e-46 188.3 94 95.7
Cfa006100 Carpinus fangiana HOM05D000563 ORTHO05D000536 3.4e-46 188.0 93 96.8
Haze_04755 Corylus avellana HOM05D000563 ORTHO05D000536 3.4e-46 188.0 93 96.8
Ciclev10023059m.g Citrus clementina HOM05D000563 ORTHO05D006573 4.4e-46 187.6 94 95.7
FAN25G0039 Fragaria x ananassa HOM05D000563 ORTHO05D006573 4.4e-46 187.6 93 97.8
Potri.003G014900 Populus trichocarpa HOM05D000563 ORTHO05D006573 4.4e-46 187.6 94 95.7
Potri.004G219000 Populus trichocarpa HOM05D000563 ORTHO05D006573 4.4e-46 187.6 94 95.7
Aqoxy2G03235 Aquilegia oxysepala HOM05D000563 ORTHO05D006573 5.8e-46 187.2 94 95.7
CsaV3_7G031130 Cucumis sativus L. HOM05D000563 ORTHO05D006573 5.8e-46 187.2 94 95.7
ECA248G1345 Erigeron canadensis HOM05D000563 ORTHO05D006573 5.8e-46 187.2 94 94.7
Gohir.A08G069900 Gossypium hirsutum HOM05D000563 ORTHO05D006573 5.8e-46 187.2 94 94.7
ClCG09G008910 Citrullus lanatus HOM05D000563 ORTHO05D006573 7.6e-46 186.8 93 95.7
MELO3C028853.2 Cucumis melo HOM05D000563 ORTHO05D006573 7.6e-46 186.8 94 94.7
HanXRQChr01g0002411 Helianthus annuus HOM05D000563 ORTHO05D006573 7.6e-46 186.8 94 94.7
TAR365G0146 Trochodendron aralioides HOM05D000563 ORTHO05D006573 7.6e-46 186.8 94 95.7
Atru.chr5.1355 Acer truncatum HOM05D000563 ORTHO05D006573 1.3e-45 186.0 93 95.7
CARHR002640 Cardamine hirsuta HOM05D000563 ORTHO05D006573 1.3e-45 186.0 94 94.7
TWI59G0344 Tripterygium wilfordii HOM05D000563 ORTHO05D006573 1.3e-45 186.0 94 94.7
Nn4g26163 Nelumbo nucifera HOM05D000563 ORTHO05D006573 1.7e-45 185.7 93 94.6
HanXRQChr15g0466481 Helianthus annuus HOM05D000563 ORTHO05D006573 2.2e-45 185.3 94 93.6
Duzib138G0853 Durio zibethinus HOM05D000563 ORTHO05D006573 2.9e-45 184.9 94 94.7
Duzib211G0084 Durio zibethinus HOM05D000563 ORTHO05D006573 2.9e-45 184.9 93 94.6
Nitab4.5_0006874g0030 Nicotiana tabacum HOM05D000563 ORTHO05D006573 2.9e-45 184.9 94 93.6
Nitab4.5_0007767g0050 Nicotiana tabacum HOM05D000563 ORTHO05D006573 2.9e-45 184.9 94 93.6
Solyc09g072970.3 Solanum lycopersicum HOM05D000563 ORTHO05D006573 2.9e-45 184.9 94 93.6
PGSC0003DMG400003836 Solanum tuberosum HOM05D000563 ORTHO05D006573 2.9e-45 184.9 94 93.6
THA.LOC104801217 Tarenaya hassleriana HOM05D000563 ORTHO05D006573 2.9e-45 184.9 94 93.6
CARHR002690 Cardamine hirsuta HOM05D000563 ORTHO05D006573 3.8e-45 184.5 94 93.6
Cc01_g19800 Coffea canephora HOM05D000563 ORTHO05D006573 3.8e-45 184.5 93 94.6
vmacro14940 Vaccinium macrocarpon HOM05D000563 ORTHO05D006573 3.8e-45 184.5 93 94.6
BcaC05g24542 Brassica carinata HOM05D000563 ORTHO05D006573 4.9e-45 184.1 94 93.6
BcaC05g24543 Brassica carinata HOM05D000563 ORTHO05D006573 4.9e-45 184.1 94 93.6
Carub.0001s0244 Capsella rubella HOM05D000563 ORTHO05D006573 4.9e-45 184.1 94 93.6
AUR62011805 Chenopodium quinoa HOM05D000563 ORTHO05D006573 4.9e-45 184.1 94 94.7
AUR62024651 Chenopodium quinoa HOM05D000563 ORTHO05D006573 4.9e-45 184.1 94 94.7
Thhalv10009199m.g Eutrema salsugineum HOM05D000563 ORTHO05D006573 4.9e-45 184.1 94 93.6
Gorai.007G134200 Gossypium raimondii HOM05D000563 ORTHO05D006573 4.9e-45 184.1 94 94.7
Nn1g02139 Nelumbo nucifera HOM05D000563 ORTHO05D006573 4.9e-45 184.1 94 93.6
Sabra03G0008000 Salix brachista HOM05D000563 ORTHO05D006573 4.9e-45 184.1 93 93.5
Sp1g02320 Schrenkiella parvula HOM05D000563 ORTHO05D006573 4.9e-45 184.1 94 93.6
Solyc06g084350.3 Solanum lycopersicum HOM05D000563 ORTHO05D006573 4.9e-45 184.1 94 92.6
Sopen06g035740 Solanum pennellii HOM05D000563 ORTHO05D006573 4.9e-45 184.1 94 92.6
HPP92_004165 Vanilla planifolia HOM05D000563 ORTHO05D006573 4.9e-45 184.1 94 92.6
Aa31LG1G9230 Aethionema arabicum HOM05D000280 ORTHO05D003998 6.4e-45 183.7 93 94.6
Hma1.2p1_0628F.1_g191850 Hydrangea macrophylla HOM05D000563 ORTHO05D006573 6.4e-45 183.7 91 95.6
Sopen09g028780 Solanum pennellii HOM05D000563 ORTHO05D006573 6.4e-45 183.7 94 92.6
unitig_26.g10157 Utricularia gibba HOM05D000563 ORTHO05D006573 6.4e-45 183.7 93 94.6
CAN.G1679.5 Capsicum annuum HOM05D000563 ORTHO05D006573 8.4e-45 183.3 93 93.5
Ah.02g112280 Amaranthus hybridus HOM05D000563 ORTHO05D006573 1.1e-44 183.0 94 93.6
Peaxi162Scf00980g00016 Petunia axillaris HOM05D000563 ORTHO05D006573 1.1e-44 183.0 93 92.5
Hund22131 Selenicereus undatus HOM05D000563 ORTHO05D006573 1.1e-44 183.0 94 92.6
A10p01870 Brassica napus HOM05D000563 ORTHO05D006573 1.4e-44 182.6 93 93.5
BolC5t28963H Brassica oleracea HOM05D000563 ORTHO05D006573 1.4e-44 182.6 94 92.6
BraA10t42461Z Brassica rapa HOM05D000563 ORTHO05D006573 1.4e-44 182.6 93 93.5
Glyma.03G150900 Glycine max HOM05D000563 ORTHO05D006573 1.4e-44 182.6 94 93.6
Glyma.19G153500 Glycine max HOM05D000563 ORTHO05D006573 1.4e-44 182.6 94 93.6
Lsat_1_v5_gn_5_187481 Lactuca sativa HOM05D000563 ORTHO05D006573 1.4e-44 182.6 92 93.5
BcaB03g16569 Brassica carinata HOM05D000563 ORTHO05D006573 2.4e-44 181.8 94 92.6
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 2.4e-44 181.8 93 93.5
Gohir.D11G125000 Gossypium hirsutum HOM05D000563 ORTHO05D006573 3.2e-44 181.4 91 95.6
AL1G12840 Arabidopsis lyrata HOM05D000563 ORTHO05D006573 4.2e-44 181.0 94 92.6
AT1G03330 Arabidopsis thaliana HOM05D000563 ORTHO05D006573 4.2e-44 181.0 94 92.6
SEGI_10645 Sequoiadendron giganteum HOM05D000563 ORTHO05D006573 4.2e-44 181.0 94 91.5
Zm00001eb416130 Zea mays HOM05D000563 ORTHO05D006573 4.2e-44 181.0 94 92.6
Os08g0154700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D006573 5.4e-44 180.6 94 91.5
Zm00001eb172640 Zea mays HOM05D000563 ORTHO05D006573 5.4e-44 180.6 94 91.5
BcaC07g36971 Brassica carinata HOM05D000563 ORTHO05D006573 7.1e-44 180.3 94 91.5
A08p37390 Brassica napus HOM05D000563 ORTHO05D006573 7.1e-44 180.3 94 91.5
C08p00530 Brassica napus HOM05D000563 ORTHO05D006573 7.1e-44 180.3 94 91.5
BolC8t46853H Brassica oleracea HOM05D000563 ORTHO05D006573 7.1e-44 180.3 94 91.5
BraA08t35636Z Brassica rapa HOM05D000563 ORTHO05D006573 7.1e-44 180.3 94 91.5
MBI17_g11989_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 1.2e-43 179.5 94 89.4
MBI19_g06754_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 1.2e-43 179.5 94 89.4
MBI19_g44975_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 1.2e-43 179.5 94 89.4
AagrBONN_evm.TU.Sc2ySwM_344.5103 Anthoceros agrestis HOM05D000563 ORTHO05D006573 1.6e-43 179.1 94 90.4
ATR0626G009 Amborella trichopoda HOM05D000563 ORTHO05D006573 2.1e-43 178.7 94 91.5
CDE11G0229 Ceratophyllum demersum HOM05D000563 ORTHO05D006573 2.1e-43 178.7 94 88.3
CDE11G0885 Ceratophyllum demersum HOM05D000563 ORTHO05D006573 2.1e-43 178.7 94 88.3
Mapoly0002s0343 Marchantia polymorpha HOM05D000563 ORTHO05D006573 3.5e-43 177.9 92 91.3
CDE05G0374 Ceratophyllum demersum HOM05D000563 ORTHO05D006573 7.8e-43 176.8 94 87.2
Nitab4.5_0001323g0030 Nicotiana tabacum HOM05D000563 ORTHO05D006573 7.8e-43 176.8 91 92.3
Pp3c2_19710 Physcomitrium patens HOM05D000563 ORTHO05D006573 1.7e-42 175.6 94 89.4
arahy.Tifrunner.gnm1.ann1.A338HQ Arachis hypogaea HOM05D000563 ORTHO05D006573 5.1e-42 174.1 86 97.7
SMO146G0171 Selaginella moellendorffii HOM05D000563 ORTHO05D006573 1.6e-40 169.1 94 86.2
SGA_v2.0_scaffold1G00443 Striga asiatica HOM05D000563 ORTHO05D003998 1.6e-40 169.1 103 81.6
Nitab4.5_0002093g0040 Nicotiana tabacum HOM05D000563 ORTHO05D006573 2.1e-40 168.7 86 93.0
PGSC0003DMG400020045 Solanum tuberosum HOM05D000563 ORTHO05D006573 1.2e-38 162.9 85 90.6
Cre10.g441950 Chlamydomonas reinhardtii HOM05D000563 ORTHO05D006573 4.5e-38 161.0 94 83.0
Sabra01G0166100 Salix brachista HOM05D000563 ORTHO05D006573 7.6e-38 160.2 154 58.4
EL10Ac2g04686 Beta vulgaris HOM05D000563 ORTHO05D006573 6.4e-37 157.1 152 57.9
PRCOL_00001823 Prasinoderma coloniale HOM05D000563 ORTHO05D006573 6.0e-35 150.6 92 75.0
TPR.G37604 Trifolium pratense HOM05D000563 ORTHO05D006573 1.1e-33 146.4 134 60.4
Ah.11g049240 Amaranthus hybridus HOM05D000563 ORTHO05D006573 2.5e-33 145.2 184 48.4
Cpa.g.sc50.145 Carica papaya HOM05D000563 ORTHO05D000536 2.2e-29 132.1 65 96.9
SalBow6G0934 Salvia bowleyana HOM05D000563 ORTHO05D006573 2.4e-23 112.1 80 72.5
TPR.G29312 Trifolium pratense HOM05D000563 ORTHO05D006573 4.0e-23 111.3 70 75.7
Ca_08598_v3 Cicer arietinum L. HOM05D000563 ORTHO05D006573 6.9e-23 110.5 56 92.9
DCAR_018402 Daucus carota HOM05D000563 ORTHO05D006573 1.2e-22 109.8 54 96.3
Sed0000117 Sechium edule HOM05D000563 ORTHO05D006573 2.6e-22 108.6 55 92.7
TPR.G20367 Trifolium pratense HOM05D000563 ORTHO05D006573 2.6e-22 108.6 54 94.4
TAR362G0386 Trochodendron aralioides HOM05D000563 ORTHO05D006573 3.4e-22 108.2 54 94.4
Rhsim01G0276800 Rhododendron simsii HOM05D000563 ORTHO05D000536 4.5e-22 107.8 53 96.2
SalBow4G1726 Salvia bowleyana HOM05D000563 ORTHO05D006573 3.8e-21 104.8 83 63.9
AUR62041552 Chenopodium quinoa HOM05D000563 ORTHO05D006573 4.6e-19 97.8 54 87.0
Oeu011172.1 Olea europaea HOM05D000563 ORTHO05D006573 3.1e-15 85.1 40 97.5
CSS0020898 Camellia sinensis var. sinensis HOM05D000563 ORTHO05D006573 1.2e-14 83.2 40 95.0
MELO3C029155.2 Cucumis melo HOM05D000563 ORTHO05D006573 3.4e-14 81.6 43 86.0
BcaB01g01720 Brassica carinata HOM05D005272 ORTHO05D006573 4.5e-14 81.3 44 90.9
Actinidia24317 Actinidia chinensis HOM05D000563 ORTHO05D006573 5.9e-14 80.9 40 92.5
MBI17_g11991_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 2.2e-13 79.0 43 79.1
MBI17_g11992_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 1.6e-11 72.8 43 69.8
Gohir.A11G120250 Gossypium hirsutum HOM05D000563 ORTHO05D006573 5.1e-10 67.8 34 94.1


User provided reference genes

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