Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
PT06G25420
(Populus trichocarpa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Populus trichocarpa | Orthologous gene family | PT06G25420 | 1 |  |
| Anchor point | PT18G02760 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | PT06G25420 | 1 | ||
| Tree-based ortholog | PT18G02760 PT06G25420 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | 1-to-1 | ATR_00007G01620 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00007G01620 | 1 | ||
| Tree-based ortholog | many-to-1 | ATR_00007G01620 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | 1-to-1 | AL1G31430 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL1G31430 | 1 | ||
| Tree-based ortholog | many-to-1 | AL1G31430 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | 1-to-1 | AT1G30380 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G30380 | 1 | ||
| Tree-based ortholog | many-to-1 | AT1G30380 | 1 | ||
| Beta vulgaris | Orthologous gene family | 1-to-1 | BV7G09200 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV7G09200 | 1 | ||
| Tree-based ortholog | many-to-1 | BV7G09200 | 1 | ||
| Brassica rapa | Orthologous gene family | 1-to-many | BR08G20730 BR09G28300 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR08G20730 | 1 | ||
| Tree-based ortholog | many-to-many | BR09G28300 BR08G20730 | 2 | ||
| Capsella rubella | Orthologous gene family | 1-to-1 | CRU_001G27370 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_001G27370 | 1 | ||
| Tree-based ortholog | many-to-1 | CRU_001G27370 | 1 | ||
| Carica papaya | Orthologous gene family | 1-to-1 | CP00017G00590 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00017G00590 | 1 | ||
| Tree-based ortholog | many-to-1 | CP00017G00590 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | 1-to-1 | CR17G06240 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR17G06240 | 1 | ||
| Tree-based ortholog | many-to-1 | CR17G06240 | 1 | ||
| Citrullus lanatus | Orthologous gene family | 1-to-1 | CL01G25060 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL01G25060 | 1 | ||
| Tree-based ortholog | many-to-1 | CL01G25060 | 1 | ||
| Citrus sinensis | Orthologous gene family | 1-to-1 | CS00010G00600 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00010G00600 | 1 | ||
| Tree-based ortholog | many-to-1 | CS00010G00600 | 1 | ||
| Cucumis melo | Orthologous gene family | 1-to-1 | CM00007G01090 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00007G01090 | 1 | ||
| Tree-based ortholog | many-to-1 | CM00007G01090 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | 1-to-1 | EG0004G01700 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0004G01700 | 1 | ||
| Tree-based ortholog | many-to-1 | EG0004G01700 | 1 | ||
| Fragaria vesca | Orthologous gene family | 1-to-1 | FV6G52260 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV6G52260 | 1 | ||
| Tree-based ortholog | many-to-1 | FV6G52260 | 1 | ||
| Glycine max | Orthologous gene family | 1-to-many | GM09G11460 GM15G22780 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM09G11460 GM15G22780 | 2 | ||
| Tree-based ortholog | many-to-many | GM09G11460 GM15G22780 | 2 | ||
| Gossypium raimondii | Orthologous gene family | 1-to-1 | GR05G26690 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR05G26690 | 1 | ||
| Tree-based ortholog | many-to-1 | GR05G26690 | 1 | ||
| Lotus japonicus | Orthologous gene family | 1-to-1 | LJ4G009440 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ4G009440 | 1 | ||
| Tree-based ortholog | many-to-1 | LJ4G009440 | 1 | ||
| Malus domestica | Orthologous gene family | 1-to-1 | MD10G020700 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD10G020700 | 1 | ||
| Tree-based ortholog | many-to-1 | MD10G020700 | 1 | ||
| Manihot esculenta | Orthologous gene family | 1-to-many | ME03264G00060 ME03604G00130 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME03264G00060 ME03604G00130 | 2 | ||
| Tree-based ortholog | many-to-many | ME03264G00060 ME03604G00130 | 2 | ||
| Medicago truncatula | Orthologous gene family | 1-to-1 | MT1G026820 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT1G026820 | 1 | ||
| Tree-based ortholog | many-to-1 | MT1G026820 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | 1-to-1 | OS07G05480 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS07G05480 | 1 | ||
| Tree-based ortholog | many-to-1 | OS07G05480 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | 1-to-1 | OL16G00700 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL16G00700 | 1 | ||
| Tree-based ortholog | many-to-1 | OL16G00700 | 1 | ||
| Physcomitrella patens | Orthologous gene family | 1-to-many | PP00005G01560 PP00005G01570 PP00074G00760 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00005G01570 PP00005G01560 PP00074G00760 | 3 | ||
| Tree-based ortholog | many-to-many | PP00005G01570 PP00005G01560 PP00074G00760 | 3 | ||
| Prunus persica | Orthologous gene family | 1-to-1 | PPE_004G08380 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_004G08380 | 1 | ||
| Tree-based ortholog | many-to-1 | PPE_004G08380 | 1 | ||
| Ricinus communis | Orthologous gene family | 1-to-1 | RC29932G00120 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29932G00120 | 1 | ||
| Tree-based ortholog | many-to-1 | RC29932G00120 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | 1-to-1 | SL08G006930 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL08G006930 | 1 | ||
| Tree-based ortholog | many-to-1 | SL08G006930 | 1 | ||
| Solanum tuberosum | Orthologous gene family | 1-to-1 | ST08G006320 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST08G006320 | 1 | ||
| Tree-based ortholog | many-to-1 | ST08G006320 | 1 | ||
| Thellungiella parvula | Orthologous gene family | 1-to-1 | TP1G26220 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP1G26220 | 1 | ||
| Tree-based ortholog | many-to-many | TP4G16930 TP1G26220 | 2 | ||
| Theobroma cacao | Orthologous gene family | 1-to-1 | TC0002G01020 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0002G01020 | 1 | ||
| Tree-based ortholog | many-to-1 | TC0002G01020 | 1 | ||
| Vitis vinifera | Orthologous gene family | 1-to-1 | VV10G05040 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV10G05040 | 1 | ||
| Tree-based ortholog | many-to-1 | VV10G05040 | 1 | ||
| Zea mays | Orthologous gene family | 1-to-1 | ZM07G01710 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM07G01710 | 1 | ||
| Tree-based ortholog | many-to-1 | ZM07G01710 | 1 |