Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
PP00179G00040
(Physcomitrella patens)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Physcomitrella patens | Orthologous gene family | PP00002G03060 PP00017G01310 PP00030G01800 ... | 5 |  |
| Anchor point | PP00017G01310 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | PP00030G01800 PP00179G00040 PP00051G01090 ... | 5 | ||
| Tree-based ortholog | PP00017G01310 PP00179G00040 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ATR_00055G00120 | 1 | |
| Tree-based ortholog | many-to-1 | ATR_00055G00120 | 1 | ||
| Arabidopsis lyrata | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AL3G38620 | 1 | |
| Tree-based ortholog | many-to-1 | AL3G38620 | 1 | ||
| Arabidopsis thaliana | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT2G17820 | 1 | |
| Tree-based ortholog | many-to-1 | AT2G17820 | 1 | ||
| Beta vulgaris | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BV6G17210 | 1 | |
| Tree-based ortholog | many-to-1 | BV6G17210 | 1 | ||
| Brassica rapa | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BR10G16860 | 1 | |
| Tree-based ortholog | many-to-1 | BR10G16860 | 1 | ||
| Capsella rubella | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CRU_003G30740 | 1 | |
| Tree-based ortholog | many-to-1 | CRU_003G30740 | 1 | ||
| Carica papaya | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00006G02710 | 1 | |
| Tree-based ortholog | many-to-1 | CP00006G02710 | 1 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | many-to-many | CR13G02200 CR02G01610 | 2 | |
| Tree-based ortholog | many-to-many | CR02G01610 CR13G02200 | 2 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL02G15240 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CL02G15240 | 1 | ||
| Tree-based ortholog | many-to-1 | CL10G01540 | 1 | ||
| Citrus sinensis | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CS00017G01350 | 1 | |
| Tree-based ortholog | many-to-1 | CS00017G01350 | 1 | ||
| Cucumis melo | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CM00021G00650 | 1 | |
| Tree-based ortholog | many-to-1 | CM00021G00650 | 1 | ||
| Eucalyptus grandis | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | EG0009G19650 | 1 | |
| Tree-based ortholog | many-to-1 | EG0009G19650 | 1 | ||
| Fragaria vesca | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | FV1G13390 | 1 | |
| Tree-based ortholog | many-to-many | FV0G07340 FV0G12990 FV3G03780 ... | 4 | ||
| Glycine max | Best-Hits-and-Inparalogs(BHI)family | many-to-many | GM01G36950 GM11G08310 | 2 | |
| Tree-based ortholog | many-to-many | GM11G08310 GM01G36950 GM02G05220 ... | 4 | ||
| Gossypium raimondii | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | GR03G00840 | 1 | |
| Tree-based ortholog | many-to-many | GR03G00840 GR07G04920 | 2 | ||
| Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | LJ2G002600 | 1 | |
| Tree-based ortholog | many-to-1 | LJ2G029240 | 1 | ||
| Malus domestica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MD15G017960 | 1 | |
| Tree-based ortholog | many-to-1 | MD15G017960 | 1 | ||
| Manihot esculenta | Best-Hits-and-Inparalogs(BHI)family | many-to-many | ME07520G02730 ME06512G01240 | 2 | |
| Tree-based ortholog | many-to-many | ME07520G02730 ME06512G01240 | 2 | ||
| Medicago truncatula | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MT8G075340 | 1 | |
| Tree-based ortholog | many-to-many | MT5G022470 MT8G075340 | 2 | ||
| Oryza sativa ssp. japonica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS10G21810 | 1 | |
| Tree-based ortholog | many-to-many | OS02G50480 OS03G50860 OS01G69920 ... | 4 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OL09G02040 | 1 | |
| Tree-based ortholog | many-to-1 | OL09G02040 | 1 | ||
| Populus trichocarpa | Best-Hits-and-Inparalogs(BHI)family | many-to-many | PT07G05640 PT05G11170 | 2 | |
| Tree-based ortholog | many-to-many | PT05G11170 PT07G05640 | 2 | ||
| Prunus persica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PPE_007G19140 | 1 | |
| Tree-based ortholog | many-to-1 | PPE_007G19140 | 1 | ||
| Ricinus communis | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | RC29656G00140 | 1 | |
| Tree-based ortholog | many-to-1 | RC29656G00140 | 1 | ||
| Solanum lycopersicum | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL02G083680 | 1 | |
| Tree-based ortholog | many-to-1 | SL02G083680 | 1 | ||
| Solanum tuberosum | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ST02G027000 | 1 | |
| Tree-based ortholog | many-to-1 | ST02G027000 | 1 | ||
| Thellungiella parvula | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TP3G31280 | 1 | |
| Tree-based ortholog | many-to-1 | TP3G31280 | 1 | ||
| Theobroma cacao | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TC0001G01480 | 1 | |
| Tree-based ortholog | many-to-1 | TC0001G01480 | 1 | ||
| Vitis vinifera | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV04G00500 | 1 | |
| Tree-based ortholog | many-to-1 | VV04G00500 | 1 | ||
| Zea mays | Best-Hits-and-Inparalogs(BHI)family | many-to-many | ZM05G05320 ZM01G50910 | 2 | |
| Tree-based ortholog | many-to-many | ZM05G39710 ZM04G24270 ZM01G50910 ... | 8 |