Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
PP00052G00880
(Physcomitrella patens)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Physcomitrella patens | Orthologous gene family | PP00001G02960 PP00032G01330 PP00052G00880 ... | 4 |  |
| Anchor point | PP00001G02960 PP00006G01530 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | PP00001G02960 PP00247G00180 PP00032G01330 ... | 4 | ||
| Tree-based ortholog | PP00006G01530 PP00247G00180 PP00001G02960 ... | 4 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ATR_00002G05870 | 1 | |
| Tree-based ortholog | many-to-many | ATR_00002G05880 ATR_00002G05870 | 2 | ||
| Arabidopsis lyrata | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AL4G08750 | 1 | |
| Tree-based ortholog | many-to-many | AL4G08750 AL7G29430 AL7G29410 ... | 4 | ||
| Arabidopsis thaliana | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT4G14716 | 1 | |
| Tree-based ortholog | many-to-many | AT2G26400 AT4G14710 AT4G14716 ... | 4 | ||
| Beta vulgaris | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BV0G18410 | 1 | |
| Tree-based ortholog | many-to-many | BV0G58520 BV0G18410 | 2 | ||
| Brassica rapa | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BR01G21210 | 1 | |
| Tree-based ortholog | many-to-many | BR01G21210 BR00G06990 BR09G20050 | 3 | ||
| Capsella rubella | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CRU_003G31650 | 1 | |
| Tree-based ortholog | many-to-many | CRU_003G31650 CRU_007G26320 CRU_007G26300 ... | 4 | ||
| Carica papaya | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00044G01180 | 1 | |
| Tree-based ortholog | many-to-many | CP00044G01190 CP00044G01180 | 2 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CR12G16690 | 1 | |
| Tree-based ortholog | many-to-1 | CR12G16690 | 1 | ||
| Citrullus lanatus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CL05G05370 | 1 | |
| Tree-based ortholog | many-to-many | CL05G05370 CL06G06260 | 2 | ||
| Citrus sinensis | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CS00011G00150 | 1 | |
| Tree-based ortholog | many-to-many | CS00011G00150 CS00011G00160 | 2 | ||
| Cucumis melo | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CM00006G06060 | 1 | |
| Tree-based ortholog | many-to-many | CM00006G06060 CM00022G00880 | 2 | ||
| Eucalyptus grandis | Best-Hits-and-Inparalogs(BHI)family | many-to-many | EG0002G08370 EG0002G08330 | 2 | |
| Tree-based ortholog | many-to-many | EG0008G27630 EG0002G08330 EG0002G15050 ... | 6 | ||
| Fragaria vesca | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | FV4G05850 | 1 | |
| Tree-based ortholog | many-to-many | FV4G05850 FV4G05840 | 2 | ||
| Glycine max | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | GM20G28860 | 1 | |
| Tree-based ortholog | many-to-many | GM10G38940 GM07G13585 GM20G28860 ... | 5 | ||
| Gossypium raimondii | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | GR06G24230 | 1 | |
| Tree-based ortholog | many-to-many | GR05G04540 GR06G24230 | 2 | ||
| Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | LJ5G034590 | 1 | |
| Tree-based ortholog | many-to-many | LJ5G034590 LJ3G010370 | 2 | ||
| Malus domestica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MD13G019300 | 1 | |
| Tree-based ortholog | many-to-many | MD00G133550 MD16G014530 MD13G019300 ... | 4 | ||
| Manihot esculenta | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ME10563G00340 | 1 | |
| Tree-based ortholog | many-to-many | ME10563G00340 ME01551G01740 ME10563G00310 | 3 | ||
| Medicago truncatula | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MT1G102870 | 1 | |
| Tree-based ortholog | many-to-many | MT1G102870 MT1G102890 | 2 | ||
| Oryza sativa ssp. japonica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS03G06620 | 1 | |
| Tree-based ortholog | many-to-many | OS04G27830 OS03G06620 OS10G28350 ... | 4 | ||
| Populus trichocarpa | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PT08G15750 | 1 | |
| Tree-based ortholog | many-to-many | PT10G08210 PT08G15750 PT08G15740 | 3 | ||
| Prunus persica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PPE_001G02050 | 1 | |
| Tree-based ortholog | many-to-many | PPE_001G02050 PPE_001G02040 | 2 | ||
| Ricinus communis | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | RC29844G00680 | 1 | |
| Tree-based ortholog | many-to-many | RC29844G00680 RC29844G00710 | 2 | ||
| Solanum lycopersicum | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL09G082650 | 1 | |
| Tree-based ortholog | many-to-many | SL09G082640 SL09G082650 SL09G082630 | 3 | ||
| Solanum tuberosum | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ST09G024520 | 1 | |
| Tree-based ortholog | many-to-many | ST03G031060 ST05G019780 ST03G033260 ... | 6 | ||
| Thellungiella parvula | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TP7G12810 | 1 | |
| Tree-based ortholog | many-to-many | TP7G12810 TP2G08650 | 2 | ||
| Theobroma cacao | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TC0004G24120 | 1 | |
| Tree-based ortholog | many-to-many | TC0004G24120 TC0004G24110 | 2 | ||
| Vitis vinifera | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV05G05440 | 1 | |
| Tree-based ortholog | many-to-many | VV05G05440 VV05G05430 | 2 | ||
| Zea mays | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM01G04330 | 1 | |
| Tree-based ortholog | many-to-many | ZM01G04330 ZM02G23210 ZM03G15350 ... | 7 |