Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
MD00G481660
(Malus domestica)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Malus domestica | Orthologous gene family | MD00G481660 MD13G003940 | 2 |  |
| Best-Hits-and-Inparalogs(BHI)family | MD13G003940 MD00G481660 | 2 | ||
| Tree-based ortholog | MD00G481640 MD00G481660 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00047G01610 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ATR_00047G01610 | 1 | ||
| Tree-based ortholog | many-to-1 | ATR_00047G01610 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-1 | AL1G14420 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AL1G14420 | 1 | ||
| Tree-based ortholog | many-to-1 | AL1G14420 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-1 | AT1G13700 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT1G13700 | 1 | ||
| Tree-based ortholog | many-to-1 | AT1G13700 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV6G14110 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BV6G14110 | 1 | ||
| Tree-based ortholog | many-to-1 | BV6G14110 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-1 | BR09G48860 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BR09G48860 | 1 | ||
| Tree-based ortholog | many-to-many | BR00G13150 BR09G48860 | 2 | ||
| Capsella rubella | Orthologous gene family | many-to-1 | CRU_001G12820 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CRU_001G12820 | 1 | ||
| Tree-based ortholog | many-to-1 | CRU_001G12820 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00001G01470 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00003G01400 | 1 | ||
| Tree-based ortholog | many-to-1 | CP00001G01470 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR01G07500 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CR01G07500 | 1 | ||
| Tree-based ortholog | many-to-many | CR08G03520 CR01G07500 | 2 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL05G24650 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CL05G24650 | 1 | ||
| Tree-based ortholog | many-to-1 | CL05G24650 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00019G01900 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CS00019G01900 | 1 | ||
| Tree-based ortholog | many-to-1 | CS00019G01900 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00016G04920 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CM00016G04920 | 1 | ||
| Tree-based ortholog | many-to-1 | CM00016G04920 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0007G18660 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | EG0007G18660 | 1 | ||
| Tree-based ortholog | many-to-1 | EG0002G25760 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV0G03840 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | FV0G03840 | 1 | ||
| Tree-based ortholog | many-to-1 | FV0G03840 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM01G07770 GM02G13250 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | GM02G13250 GM01G07770 | 2 | ||
| Tree-based ortholog | many-to-many | GM01G07770 GM02G13250 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR05G14640 GR13G09520 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | GR13G09520 GR05G14640 | 2 | ||
| Tree-based ortholog | many-to-many | GR05G14640 GR13G09520 | 2 | ||
| Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | LJ1G013150 | 1 | |
| Tree-based ortholog | many-to-many | LJ1G013130 LJ1G013150 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME03803G00020 ME08860G00210 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ME03803G00020 | 1 | ||
| Tree-based ortholog | many-to-many | ME08860G00210 ME03803G00020 | 2 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT5G045000 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MT5G045000 | 1 | ||
| Tree-based ortholog | many-to-1 | MT5G045000 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS03G30300 OS07G41280 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS07G41280 | 1 | ||
| Tree-based ortholog | many-to-many | OS07G41280 OS03G30300 | 2 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OL15G01360 | 1 | |
| Tree-based ortholog | many-to-many | OL16G01140 OL15G01360 | 2 | ||
| Physcomitrella patens | Orthologous gene family | many-to-1 | PP00260G00070 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PP00001G00580 | 1 | ||
| Tree-based ortholog | many-to-1 | PP00001G00580 | 1 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT08G09720 PT10G15710 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | PT08G09720 PT10G15710 | 2 | ||
| Tree-based ortholog | many-to-many | PT08G09720 PT10G15710 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_001G30080 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PPE_001G30080 | 1 | ||
| Tree-based ortholog | many-to-1 | PPE_001G30080 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC30174G04850 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | RC30174G04850 | 1 | ||
| Tree-based ortholog | many-to-1 | RC30174G04850 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL05G012110 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL05G012110 | 1 | ||
| Tree-based ortholog | many-to-many | SL05G012110 SL01G010250 | 2 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST05G005930 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ST05G005930 | 1 | ||
| Tree-based ortholog | many-to-1 | ST05G005930 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP1G12210 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TP1G12210 | 1 | ||
| Tree-based ortholog | many-to-1 | TP1G12210 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0002G32740 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TC0002G32740 | 1 | ||
| Tree-based ortholog | many-to-1 | TC0002G32740 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV01G10620 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV01G10620 | 1 | ||
| Tree-based ortholog | many-to-1 | VV01G10620 | 1 | ||
| Zea mays | Orthologous gene family | many-to-1 | ZM07G26640 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM07G26640 | 1 | ||
| Tree-based ortholog | many-to-many | ZM07G26640 ZM01G18210 | 2 |