Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
GM04G01720
(Glycine max)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Glycine max | Orthologous gene family | GM04G01720 GM06G01810 | 2 |  |
| Tree-based ortholog | GM04G01720 GM06G01810 | 2 | ||
| Anchor point | GM07G35420 GM06G01810 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | GM06G01810 GM04G01720 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-many | ATR_00004G02550 ATR_00044G01040 | 2 | |
| Tree-based ortholog | many-to-many | ATR_00004G02550 ATR_00044G01040 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ATR_00044G01040 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-many | AL3G24430 AL7G28800 | 2 | |
| Tree-based ortholog | many-to-1 | AL4G18880 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AL4G18880 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT3G22180 AT4G15080 | 2 | |
| Tree-based ortholog | many-to-1 | AT2G33640 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT2G33640 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-many | BV1G00860 BV6G06960 | 2 | |
| Tree-based ortholog | many-to-1 | BV1G00860 | 1 | ||
| Anchor point | many-to-1 | BV1G00860 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BV1G00860 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR01G20680 BR01G29020 BR04G20040 | 3 | |
| Tree-based ortholog | many-to-1 | BR04G20040 | 1 | ||
| Anchor point | many-to-1 | BR04G20040 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BR04G20040 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_003G21370 CRU_004G14780 CRU_007G25750 | 3 | |
| Tree-based ortholog | many-to-1 | CRU_004G14780 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CRU_004G14780 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00008G02800 | 1 | |
| Tree-based ortholog | many-to-1 | CP00026G01580 | 1 | ||
| Anchor point | many-to-1 | CP00026G01580 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00026G01580 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR10G02720 | 1 | |
| Tree-based ortholog | many-to-1 | CR10G02720 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CR10G02720 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL07G15540 | 1 | |
| Tree-based ortholog | many-to-1 | CL07G15540 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CL07G15540 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-many | CS00002G06950 CS00036G01290 | 2 | |
| Tree-based ortholog | many-to-1 | CS00002G06950 | 1 | ||
| Anchor point | many-to-1 | CS00002G06940 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CS00002G06950 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00027G01790 | 1 | |
| Tree-based ortholog | many-to-1 | CM00027G01790 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CM00027G01790 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0006G30500 | 1 | |
| Tree-based ortholog | many-to-1 | EG0006G30500 | 1 | ||
| Anchor point | many-to-1 | EG0006G30500 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | EG0006G30500 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV5G28900 | 1 | |
| Tree-based ortholog | many-to-1 | FV5G28900 | 1 | ||
| Anchor point | many-to-1 | FV5G28900 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | FV5G28900 | 1 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR09G18630 GR12G18610 GR13G09000 | 3 | |
| Tree-based ortholog | many-to-1 | GR09G18630 | 1 | ||
| Anchor point | many-to-1 | GR09G18630 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | GR09G18630 | 1 | ||
| Lotus japonicus | Tree-based ortholog | many-to-1 | LJ3G049660 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | LJ2G021250 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G452100 MD08G014890 | 2 | |
| Tree-based ortholog | many-to-many | MD00G452100 MD08G014890 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | MD08G014890 MD00G452100 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-1 | ME01895G00130 | 1 | |
| Tree-based ortholog | many-to-1 | ME01895G00130 | 1 | ||
| Anchor point | many-to-1 | ME01895G00130 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ME01895G00130 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT3G115950 MT4G082560 | 2 | |
| Tree-based ortholog | many-to-1 | MT3G115950 | 1 | ||
| Anchor point | many-to-1 | MT3G115950 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MT3G115950 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS08G44230 OS09G38970 | 2 | |
| Tree-based ortholog | many-to-1 | OS04G49560 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS04G49560 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL15G02080 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OL15G02080 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00014G02130 PP00096G00470 PP00118G00390 | 3 | |
| Tree-based ortholog | many-to-many | PP00118G00390 PP00096G00470 PP00064G00490 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | PP00096G00470 PP00118G00390 | 2 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT02G00690 PT05G25440 | 2 | |
| Tree-based ortholog | many-to-many | PT02G00690 PT05G25440 | 2 | ||
| Anchor point | many-to-many | PT05G25440 PT02G00690 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | PT05G25440 PT02G00690 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_005G00780 | 1 | |
| Tree-based ortholog | many-to-1 | PPE_005G00780 | 1 | ||
| Anchor point | many-to-1 | PPE_005G00780 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PPE_005G00780 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC30170G07170 | 1 | |
| Tree-based ortholog | many-to-1 | RC30170G07170 | 1 | ||
| Anchor point | many-to-1 | RC30170G07170 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | RC30170G07170 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL04G082650 | 1 | |
| Tree-based ortholog | many-to-1 | SL04G082650 | 1 | ||
| Anchor point | many-to-1 | SL04G082650 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL04G082650 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST04G036130 | 1 | |
| Tree-based ortholog | many-to-1 | ST04G036130 | 1 | ||
| Anchor point | many-to-1 | ST04G036130 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ST04G036130 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP7G13310 | 1 | |
| Tree-based ortholog | many-to-1 | TP4G16000 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TP4G16000 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0008G06150 | 1 | |
| Tree-based ortholog | many-to-1 | TC0008G06150 | 1 | ||
| Anchor point | many-to-1 | TC0008G06150 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TC0008G06150 | 1 | ||
| Vitis vinifera | Tree-based ortholog | many-to-1 | VV18G12590 | 1 | |
| Anchor point | many-to-1 | VV18G12590 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV18G12590 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM01G36640 ZM02G06180 | 2 | |
| Tree-based ortholog | many-to-1 | ZM02G06180 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM02G06180 | 1 |