Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
CRU_005G28660
(Capsella rubella)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Capsella rubella | Orthologous gene family | CRU_003G07310 CRU_005G28660 | 2 |  |
| Tree-based ortholog | CRU_005G28660 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | CRU_005G28660 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00022G03480 | 1 | |
| Tree-based ortholog | 1-to-1 | ATR_00022G03480 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00022G03480 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-1 | AL5G34700 | 1 | |
| Tree-based ortholog | 1-to-1 | AL5G34700 | 1 | ||
| Anchor point | N/A | AL5G34700 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL5G34700 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-1 | AT3G08505 | 1 | |
| Tree-based ortholog | 1-to-1 | AT3G08505 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT3G08505 | 1 | ||
| Beta vulgaris | Tree-based ortholog | 1-to-1 | BV2G09740 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV2G09740 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR01G39360 BR08G09640 BR08G24330 | 3 | |
| Tree-based ortholog | 1-to-many | BR08G09640 BR08G24330 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | BR08G24330 BR08G09640 | 2 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP29767G00020 | 1 | |
| Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR06G06970 | 1 | |
| Tree-based ortholog | 1-to-1 | CR06G06970 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR06G06970 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL09G03840 | 1 | |
| Tree-based ortholog | 1-to-1 | CL09G03840 | 1 | ||
| Anchor point | N/A | CL09G03840 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL09G03840 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00003G06280 | 1 | |
| Tree-based ortholog | 1-to-1 | CS00003G06280 | 1 | ||
| Anchor point | N/A | CS00003G06280 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00003G06280 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00060G01880 | 1 | |
| Tree-based ortholog | 1-to-1 | CM00060G01880 | 1 | ||
| Anchor point | N/A | CM00060G01880 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00060G01880 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0010G11180 | 1 | |
| Tree-based ortholog | 1-to-1 | EG0010G11180 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0010G11180 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV7G02230 | 1 | |
| Tree-based ortholog | 1-to-1 | FV7G02230 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV7G02230 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM08G16340 GM15G42750 | 2 | |
| Tree-based ortholog | 1-to-many | GM08G16340 GM15G42750 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM15G42750 GM08G16340 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR04G03690 GR04G17330 | 2 | |
| Tree-based ortholog | 1-to-many | GR04G03690 GR04G17330 | 2 | ||
| Anchor point | N/A | GR04G17330 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR04G03690 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD02G029570 MD07G000690 | 2 | |
| Tree-based ortholog | 1-to-many | MD07G000690 MD02G029570 | 2 | ||
| Anchor point | N/A | MD07G000690 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD07G000690 | 1 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME06407G00370 ME11106G00430 | 2 | |
| Tree-based ortholog | 1-to-1 | ME11106G00430 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME11106G00430 ME06407G00370 | 2 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT3G028190 | 1 | |
| Tree-based ortholog | 1-to-1 | MT3G028190 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT3G028190 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS06G21390 | 1 | |
| Tree-based ortholog | 1-to-1 | OS06G21390 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS06G21390 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL03G04620 | 1 | |
| Tree-based ortholog | 1-to-1 | OL03G04620 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL03G04620 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-1 | PP00154G00090 | 1 | |
| Tree-based ortholog | 1-to-1 | PP00154G00090 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00154G00090 | 1 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT01G26820 PT09G06260 | 2 | |
| Tree-based ortholog | 1-to-1 | PT04G13440 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT09G06260 PT01G26820 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_002G07250 | 1 | |
| Tree-based ortholog | 1-to-1 | PPE_002G07250 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_002G07250 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC30061G00100 | 1 | |
| Tree-based ortholog | 1-to-1 | RC30061G00100 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30061G00100 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL01G087030 SL10G038000 | 2 | |
| Tree-based ortholog | 1-to-many | SL01G087030 SL10G038000 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL10G038000 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-many | ST01G026470 ST10G012950 | 2 | |
| Tree-based ortholog | 1-to-many | ST01G026470 ST10G012950 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST10G012950 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP1G00020 TP5G00030 | 2 | |
| Tree-based ortholog | 1-to-many | TP1G00020 TP5G00030 | 2 | ||
| Anchor point | N/A | TP5G00030 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP1G00020 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0001G40660 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0001G40660 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0001G40660 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV13G07600 | 1 | |
| Tree-based ortholog | 1-to-1 | VV13G07600 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV13G07600 | 1 | ||
| Zea mays | Orthologous gene family | many-to-1 | ZM09G08830 | 1 | |
| Tree-based ortholog | 1-to-many | ZM09G08830 ZM05G38660 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM09G08830 | 1 |