Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
CRU_003G01770
(Capsella rubella)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Capsella rubella | Orthologous gene family | CRU_003G01770 CRU_006G14260 | 2 |  |
| Tree-based ortholog | CRU_003G01770 | 1 | ||
| Anchor point | CRU_006G14260 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | CRU_003G01770 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00089G01070 | 1 | |
| Tree-based ortholog | 1-to-1 | ATR_00089G01070 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00089G01070 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-many | AL3G01960 AL6G16310 | 2 | |
| Tree-based ortholog | 1-to-1 | AL3G01960 | 1 | ||
| Anchor point | 1-to-many | AL6G16310 AL3G01960 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL3G01960 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT3G02770 AT5G16450 | 2 | |
| Tree-based ortholog | 1-to-1 | AT3G02770 | 1 | ||
| Anchor point | 1-to-many | AT5G16450 AT3G02770 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT3G02770 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV4G15310 | 1 | |
| Tree-based ortholog | 1-to-1 | BV4G15310 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV4G15310 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR01G35450 BR03G06940 BR03G29080 | 3 | |
| Tree-based ortholog | 1-to-many | BR01G35450 BR03G29080 | 2 | ||
| Anchor point | 1-to-many | BR03G06940 BR01G35450 BR03G29080 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR01G35450 | 1 | ||
| Carica papaya | Tree-based ortholog | 1-to-1 | CP00012G00570 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00012G00570 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-1 | CR13G03740 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR13G03740 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL03G10370 | 1 | |
| Tree-based ortholog | 1-to-1 | CL03G10370 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL03G10370 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00130G00190 | 1 | |
| Tree-based ortholog | 1-to-1 | CS00130G00190 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00130G00190 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00012G00670 | 1 | |
| Tree-based ortholog | 1-to-1 | CM00012G00670 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00012G00670 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0001G14650 | 1 | |
| Tree-based ortholog | 1-to-1 | EG0001G14650 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0001G14650 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV0G28120 | 1 | |
| Tree-based ortholog | 1-to-1 | FV0G28120 | 1 | ||
| Anchor point | 1-to-1 | FV0G28120 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV0G28120 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM09G38560 GM18G47760 | 2 | |
| Tree-based ortholog | 1-to-many | GM09G38560 GM18G47760 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM18G47760 GM09G38560 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-1 | GR12G02710 | 1 | |
| Tree-based ortholog | 1-to-1 | GR12G02710 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR12G02710 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G290290 MD04G019880 MD12G025240 | 3 | |
| Tree-based ortholog | 1-to-many | MD00G290290 MD04G019880 MD12G025240 | 3 | ||
| Anchor point | 1-to-many | MD12G025240 MD04G019880 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD12G025240 | 1 | ||
| Manihot esculenta | Orthologous gene family | many-to-1 | ME06711G00350 | 1 | |
| Tree-based ortholog | 1-to-1 | ME06711G00350 | 1 | ||
| Anchor point | 1-to-1 | ME06711G00350 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME06711G00350 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT7G080040 | 1 | |
| Tree-based ortholog | 1-to-1 | MT7G080040 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT7G080040 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS01G52460 OS02G52430 | 2 | |
| Tree-based ortholog | 1-to-many | OS02G52430 OS01G52460 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | OS02G52430 OS01G52460 | 2 | ||
| Ostreococcus lucimarinus | Tree-based ortholog | 1-to-1 | OL03G02500 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL03G02500 | 1 | ||
| Physcomitrella patens | Tree-based ortholog | 1-to-many | PP00186G00200 PP00197G00240 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00197G00240 PP00186G00200 | 2 | ||
| Populus trichocarpa | Orthologous gene family | many-to-1 | PT19G05380 | 1 | |
| Tree-based ortholog | 1-to-many | PT13G08570 PT19G05380 | 2 | ||
| Anchor point | 1-to-many | PT13G08570 PT19G05380 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT19G05380 | 1 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_006G36380 | 1 | |
| Tree-based ortholog | 1-to-1 | PPE_006G36380 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_006G36380 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC29929G00860 | 1 | |
| Tree-based ortholog | 1-to-1 | RC29929G00860 | 1 | ||
| Anchor point | 1-to-1 | RC29929G00860 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29929G00860 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL04G008280 | 1 | |
| Tree-based ortholog | 1-to-1 | SL04G008280 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL04G008280 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST04G007310 | 1 | |
| Tree-based ortholog | 1-to-1 | ST04G007310 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST04G007310 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP3G01800 TP6G27740 | 2 | |
| Tree-based ortholog | 1-to-1 | TP3G01800 | 1 | ||
| Anchor point | 1-to-many | TP6G27740 TP3G01800 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP3G01800 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0005G19610 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0005G19610 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0005G19610 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV04G03240 | 1 | |
| Tree-based ortholog | 1-to-1 | VV04G03240 | 1 | ||
| Anchor point | 1-to-1 | VV04G03240 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV04G03240 | 1 | ||
| Zea mays | Orthologous gene family | many-to-1 | ZM05G16490 | 1 | |
| Tree-based ortholog | 1-to-1 | ZM05G16490 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM05G16490 | 1 |