Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
CRU_002G19190
(Capsella rubella)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Capsella rubella | Orthologous gene family | CRU_001G35760 CRU_001G35770 CRU_002G19190 | 3 |  |
| Tree-based ortholog | CRU_002G19190 | 1 | ||
| Anchor point | CRU_003G16940 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | CRU_002G19190 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00007G02780 | 1 | |
| Tree-based ortholog | 1-to-1 | ATR_00007G02780 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00007G02780 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-1 | AL2G22410 | 1 | |
| Tree-based ortholog | 1-to-1 | AL2G22410 | 1 | ||
| Anchor point | 1-to-many | AL1G42270 AL3G19430 AL2G22410 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL2G22410 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-1 | AT1G73600 | 1 | |
| Tree-based ortholog | 1-to-1 | AT1G73600 | 1 | ||
| Anchor point | 1-to-many | AT3G18000 AT1G73600 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G73600 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-many | BV5G18040 BV5G21080 BV8G09170 | 3 | |
| Tree-based ortholog | 1-to-1 | BV5G18040 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | BV8G09170 BV5G21080 | 2 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR04G07750 BR07G20810 | 2 | |
| Tree-based ortholog | 1-to-1 | BR07G29360 | 1 | ||
| Anchor point | 1-to-many | BR07G29360 BR05G25740 BR06G04090 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR07G20810 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00003G03960 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00003G03960 | 1 | ||
| Anchor point | 1-to-1 | CP00003G03960 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00003G03960 | 1 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR14G03700 | 1 | |
| Citrullus lanatus | Orthologous gene family | many-to-many | CL04G10530 CL06G14890 CL06G14900 | 3 | |
| Tree-based ortholog | 1-to-many | CL04G10530 CL06G14890 CL06G14900 | 3 | ||
| Anchor point | 1-to-many | CL04G10530 CL06G14890 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL06G14890 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00039G00150 | 1 | |
| Tree-based ortholog | 1-to-1 | CS00039G00150 | 1 | ||
| Anchor point | 1-to-1 | CS00039G00150 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00039G00150 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-many | CM00001G02260 CM00030G02880 | 2 | |
| Tree-based ortholog | 1-to-many | CM00001G02260 CM00030G02880 | 2 | ||
| Anchor point | 1-to-many | CM00001G02260 CM00030G02880 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00001G02260 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0002G07810 | 1 | |
| Tree-based ortholog | 1-to-1 | EG0002G07810 | 1 | ||
| Anchor point | 1-to-1 | EG0002G07810 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0002G07810 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV5G16720 | 1 | |
| Tree-based ortholog | 1-to-1 | FV5G16720 | 1 | ||
| Anchor point | 1-to-1 | FV5G16720 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV5G16720 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM05G33790 GM07G11580 GM09G30650 | 3 | |
| Tree-based ortholog | 1-to-many | GM09G30650 GM07G11580 GM08G05911 ... | 5 | ||
| Anchor point | 1-to-many | GM07G11580 GM08G05911 GM05G33790 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM07G11580 GM09G30650 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR05G13200 GR08G28990 | 2 | |
| Tree-based ortholog | 1-to-many | GR08G28990 GR05G13200 | 2 | ||
| Anchor point | 1-to-1 | GR08G28990 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR05G13200 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ4G051350 | 1 | |
| Tree-based ortholog | 1-to-many | LJ2G047190 LJ4G051350 | 2 | ||
| Anchor point | 1-to-1 | LJ4G051350 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ4G051350 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G468230 MD00G472660 MD14G021900 | 3 | |
| Tree-based ortholog | 1-to-many | MD14G021900 MD00G472660 MD00G468230 | 3 | ||
| Anchor point | 1-to-1 | MD14G021900 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD00G468230 MD00G472660 MD14G021900 | 3 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME02572G00120 ME06631G00400 | 2 | |
| Tree-based ortholog | 1-to-many | ME06631G00400 ME02572G00120 | 2 | ||
| Anchor point | 1-to-many | ME06631G00400 ME02572G00120 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME06631G00400 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT6G069600 MT8G107370 | 2 | |
| Tree-based ortholog | 1-to-many | MT6G069600 MT8G107370 | 2 | ||
| Anchor point | 1-to-many | MT6G069600 MT8G107370 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT6G069600 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS01G50030 OS01G50032 OS05G47540 ... | 4 | |
| Tree-based ortholog | 1-to-many | OS05G47540 OS05G47545 OS01G50032 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | OS01G50030 OS05G47540 OS01G50032 | 3 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL02G00370 | 1 | |
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00060G00940 PP00107G00310 | 2 | |
| Tree-based ortholog | 1-to-many | PP00060G00940 PP00107G00310 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00060G00940 | 1 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT12G04740 PT15G03900 | 2 | |
| Tree-based ortholog | 1-to-many | PT12G04740 PT15G03900 | 2 | ||
| Anchor point | 1-to-many | PT15G03900 PT12G04730 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT12G04740 PT15G03900 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_005G23390 | 1 | |
| Tree-based ortholog | 1-to-1 | PPE_005G23390 | 1 | ||
| Anchor point | 1-to-1 | PPE_005G23390 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_005G23390 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC28102G00050 | 1 | |
| Tree-based ortholog | 1-to-1 | RC28102G00050 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC28102G00050 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL03G118750 SL06G068950 SL12G040790 | 3 | |
| Tree-based ortholog | 1-to-many | SL06G068950 SL03G118750 SL12G040790 | 3 | ||
| Anchor point | 1-to-many | SL03G118750 SL06G068950 SL12G040790 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL12G040790 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-many | ST03G032240 ST06G025980 ST12G020880 | 3 | |
| Tree-based ortholog | 1-to-many | ST06G025980 ST03G032240 ST12G020880 | 3 | ||
| Anchor point | 1-to-many | ST06G025980 ST03G032240 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST12G020880 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP5G28500 TP5G28760 | 2 | |
| Tree-based ortholog | 1-to-many | TP5G28500 TP5G28760 | 2 | ||
| Anchor point | 1-to-many | TP5G28760 TP5G28500 TP1G35550 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | TP5G28500 TP5G28760 | 2 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0003G05440 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0003G05440 | 1 | ||
| Anchor point | 1-to-1 | TC0003G05440 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0003G05440 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-many | VV01G06330 VV01G06350 VV17G07140 | 3 | |
| Tree-based ortholog | 1-to-many | VV01G06330 VV01G06350 | 2 | ||
| Anchor point | 1-to-many | VV17G07140 VV01G06350 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV17G07140 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM03G34130 ZM06G30170 | 2 | |
| Tree-based ortholog | 1-to-1 | ZM08G26020 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM06G30170 | 1 |