Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
CRU_001G16900
(Capsella rubella)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Capsella rubella | Orthologous gene family | CRU_001G16900 | 1 |  |
| Tree-based ortholog | CRU_001G16900 | 1 | ||
| Anchor point | CRU_002G19350 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | CRU_001G16900 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Tree-based ortholog | 1-to-many | ATR_00019G03440 ATR_00144G00130 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00144G00130 | 1 | ||
| Arabidopsis lyrata | Tree-based ortholog | 1-to-1 | AL1G18900 | 1 | |
| Anchor point | 1-to-many | AL1G18900 AL2G22640 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL1G18900 | 1 | ||
| Arabidopsis thaliana | Tree-based ortholog | 1-to-1 | AT1G17970 | 1 | |
| Anchor point | 1-to-many | AT1G73760 AT1G17970 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G17970 | 1 | ||
| Beta vulgaris | Tree-based ortholog | 1-to-1 | BV0G31970 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G31970 | 1 | ||
| Brassica rapa | Tree-based ortholog | 1-to-1 | BR08G26220 | 1 | |
| Anchor point | 1-to-many | BR07G29510 BR08G26220 BR07G20710 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR08G26220 | 1 | ||
| Carica papaya | Tree-based ortholog | 1-to-1 | CP00003G04550 | 1 | |
| Anchor point | 1-to-1 | CP00003G04550 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00003G04550 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-1 | CR10G05410 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR10G05410 | 1 | ||
| Citrullus lanatus | Tree-based ortholog | 1-to-1 | CL04G10730 | 1 | |
| Anchor point | 1-to-1 | CL04G10730 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL04G10730 | 1 | ||
| Citrus sinensis | Tree-based ortholog | 1-to-1 | CS00228G00080 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00228G00080 | 1 | ||
| Cucumis melo | Tree-based ortholog | 1-to-1 | CM00001G02040 | 1 | |
| Anchor point | 1-to-1 | CM00001G02040 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00001G02040 | 1 | ||
| Eucalyptus grandis | Tree-based ortholog | 1-to-1 | EG0002G06890 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0002G06890 | 1 | ||
| Fragaria vesca | Tree-based ortholog | 1-to-1 | FV5G17360 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV5G17360 | 1 | ||
| Glycine max | Tree-based ortholog | 1-to-many | GM08G05410 GM05G34270 GM07G10930 ... | 4 | |
| Anchor point | 1-to-many | GM08G05410 GM09G31170 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM05G34270 GM08G05410 | 2 | ||
| Gossypium raimondii | Tree-based ortholog | 1-to-many | GR06G05850 GR01G06770 | 2 | |
| Anchor point | 1-to-1 | GR06G05850 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR01G06770 | 1 | ||
| Lotus japonicus | Tree-based ortholog | 1-to-1 | LJ2G010710 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ2G010710 | 1 | ||
| Malus domestica | Tree-based ortholog | 1-to-many | MD06G018510 MD00G103910 | 2 | |
| Anchor point | 1-to-many | MD06G018510 MD14G021540 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD00G103910 | 1 | ||
| Manihot esculenta | Tree-based ortholog | 1-to-many | ME12711G00180 ME08356G00010 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME12711G00180 ME08356G00010 | 2 | ||
| Medicago truncatula | Tree-based ortholog | 1-to-many | MT8G106240 MT6G082620 | 2 | |
| Anchor point | 1-to-1 | MT6G082620 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT8G106240 | 1 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | 1-to-many | OS05G47670 OS01G49770 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS01G49770 | 1 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL10G02390 | 1 | |
| Physcomitrella patens | Tree-based ortholog | 1-to-many | PP00254G00180 PP00162G00360 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00162G00360 PP00254G00180 | 2 | ||
| Populus trichocarpa | Tree-based ortholog | 1-to-many | PT12G05380 PT15G04390 | 2 | |
| Anchor point | 1-to-1 | PT15G04390 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT15G04390 PT12G05380 | 2 | ||
| Prunus persica | Tree-based ortholog | 1-to-1 | PPE_005G22760 | 1 | |
| Anchor point | 1-to-1 | PPE_005G22760 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_005G22760 | 1 | ||
| Ricinus communis | Tree-based ortholog | 1-to-1 | RC29747G00430 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29747G00430 | 1 | ||
| Solanum lycopersicum | Tree-based ortholog | 1-to-many | SL12G040390 SL03G118840 | 2 | |
| Anchor point | 1-to-many | SL03G118840 SL12G040390 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL03G118840 | 1 | ||
| Solanum tuberosum | Tree-based ortholog | 1-to-many | ST05G008810 ST03G032360 | 2 | |
| Anchor point | 1-to-1 | ST03G032360 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST03G032360 | 1 | ||
| Thellungiella parvula | Tree-based ortholog | 1-to-1 | TP1G16030 | 1 | |
| Anchor point | 1-to-many | TP5G28950 TP1G16030 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP1G16030 | 1 | ||
| Theobroma cacao | Tree-based ortholog | 1-to-1 | TC0003G04180 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0003G04180 | 1 | ||
| Vitis vinifera | Tree-based ortholog | 1-to-1 | VV17G06440 | 1 | |
| Anchor point | 1-to-1 | VV17G06440 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV17G06440 | 1 | ||
| Zea mays | Tree-based ortholog | 1-to-many | ZM06G30300 ZM03G34270 ZM08G25960 | 3 | |
| Anchor point | 1-to-1 | ZM07G19860 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM06G30300 | 1 |