Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
CRU_001G01850
(Capsella rubella)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Capsella rubella | Orthologous gene family | CRU_001G01850 CRU_007G35220 CRU_033G00040 | 3 |  |
| Tree-based ortholog | CRU_007G35220 CRU_001G01850 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | CRU_007G35220 CRU_001G01850 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00003G03010 | 1 | |
| Tree-based ortholog | many-to-1 | ATR_00003G03010 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ATR_00003G03010 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-1 | AL1G02120 | 1 | |
| Tree-based ortholog | many-to-1 | AL1G02120 | 1 | ||
| Anchor point | N/A | AL1G02120 AL4G32570 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AL1G02120 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT1G02880 AT2G44750 | 2 | |
| Tree-based ortholog | many-to-many | AT2G44750 AT1G02880 | 2 | ||
| Anchor point | N/A | AT1G02880 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT1G02880 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV0G57770 | 1 | |
| Tree-based ortholog | many-to-1 | BV0G57770 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BV0G57770 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-1 | BR08G31930 | 1 | |
| Tree-based ortholog | many-to-many | BR08G31930 BR10G05210 | 2 | ||
| Anchor point | N/A | BR08G31930 BR10G05210 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BR10G05210 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR01G08670 | 1 | |
| Tree-based ortholog | many-to-1 | CR01G08670 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CR01G08670 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL09G05600 | 1 | |
| Tree-based ortholog | many-to-1 | CL09G05600 | 1 | ||
| Anchor point | N/A | CL09G05600 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CL09G05600 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00001G07800 | 1 | |
| Tree-based ortholog | many-to-1 | CS00001G07800 | 1 | ||
| Anchor point | N/A | CS00001G07800 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CS00001G07800 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00026G03450 | 1 | |
| Tree-based ortholog | many-to-1 | CM00026G03450 | 1 | ||
| Anchor point | N/A | CM00026G03450 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CM00026G03450 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0008G09960 | 1 | |
| Tree-based ortholog | many-to-1 | EG0008G09960 | 1 | ||
| Anchor point | N/A | EG0008G09960 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | EG0008G09960 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV2G27840 | 1 | |
| Tree-based ortholog | many-to-1 | FV2G27840 | 1 | ||
| Anchor point | N/A | FV2G27840 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | FV2G27840 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM03G37160 GM19G39770 | 2 | |
| Tree-based ortholog | many-to-many | GM03G37160 GM19G39770 | 2 | ||
| Anchor point | N/A | GM19G39770 GM03G37160 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | GM19G39770 GM03G37160 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR04G05260 GR08G14640 | 2 | |
| Tree-based ortholog | many-to-many | GR08G14640 GR04G05260 | 2 | ||
| Anchor point | N/A | GR04G05260 GR08G14640 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | GR08G14640 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ1G035860 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | LJ1G035860 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G391670 MD00G453810 MD00G479190 ... | 4 | |
| Tree-based ortholog | many-to-many | MD00G391670 MD00G479190 MD00G453810 ... | 4 | ||
| Anchor point | N/A | MD03G024340 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | MD11G027980 MD00G479190 MD00G391670 | 3 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME04457G00900 ME08265G03590 | 2 | |
| Tree-based ortholog | many-to-many | ME08265G03590 ME04457G00900 | 2 | ||
| Anchor point | N/A | ME08265G03590 ME04457G00900 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | ME04457G00900 ME08265G03590 | 2 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT7G108680 MT8G058563 | 2 | |
| Tree-based ortholog | many-to-many | MT8G058563 MT7G108680 | 2 | ||
| Anchor point | N/A | MT7G108680 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MT7G108680 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS01G70580 OS05G30454 | 2 | |
| Tree-based ortholog | many-to-1 | OS01G25440 | 1 | ||
| Anchor point | N/A | OS05G30454 OS01G70580 OS01G25440 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS01G70580 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL01G02730 | 1 | |
| Tree-based ortholog | many-to-1 | OL01G02730 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OL01G02730 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00115G00450 PP00231G00110 | 2 | |
| Tree-based ortholog | many-to-many | PP00115G00450 PP00231G00110 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | PP00115G00450 PP00231G00110 | 2 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT02G20580 PT14G13090 | 2 | |
| Tree-based ortholog | many-to-many | PT14G13090 PT02G20580 | 2 | ||
| Anchor point | N/A | PT02G20580 PT14G13090 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | PT02G20580 PT14G13090 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_008G27160 | 1 | |
| Tree-based ortholog | many-to-1 | PPE_008G27160 | 1 | ||
| Anchor point | N/A | PPE_008G27160 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PPE_008G27160 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC29986G00020 | 1 | |
| Tree-based ortholog | many-to-1 | RC29986G00020 | 1 | ||
| Anchor point | N/A | RC29986G00020 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | RC29986G00020 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL09G074970 | 1 | |
| Tree-based ortholog | many-to-1 | SL09G074970 | 1 | ||
| Anchor point | N/A | SL09G074970 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL09G074970 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST09G022120 | 1 | |
| Tree-based ortholog | many-to-1 | ST09G022120 | 1 | ||
| Anchor point | N/A | ST09G022120 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ST09G022120 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP1G01880 | 1 | |
| Tree-based ortholog | many-to-1 | TP1G01880 | 1 | ||
| Anchor point | N/A | TP1G01880 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TP1G01880 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0001G29630 | 1 | |
| Tree-based ortholog | many-to-1 | TC0001G29630 | 1 | ||
| Anchor point | N/A | TC0001G29630 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TC0001G29630 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV07G08130 | 1 | |
| Tree-based ortholog | many-to-1 | VV07G08130 | 1 | ||
| Anchor point | N/A | VV07G08130 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV07G08130 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM03G12210 ZM06G21990 | 2 | |
| Tree-based ortholog | many-to-1 | ZM03G12210 | 1 | ||
| Anchor point | N/A | ZM06G21990 ZM03G12210 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM03G12210 | 1 |