Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AT1G15940
(Arabidopsis thaliana)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | AT1G15940 AT1G80810 | 2 |  |
| Tree-based ortholog | AT1G15940 | 1 | ||
| Anchor point | AT1G80810 AT5G10950 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | AT1G15940 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Tree-based ortholog | 1-to-1 | ATR_00065G01440 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00065G01440 | 1 | ||
| Arabidopsis lyrata | Tree-based ortholog | 1-to-1 | AL6G10690 | 1 | |
| Anchor point | many-to-1 | AL6G10690 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL7G09670 | 1 | ||
| Beta vulgaris | Tree-based ortholog | 1-to-1 | BV9G18970 | 1 | |
| Anchor point | many-to-many | BV2G11570 BV9G18960 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV2G11570 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR06G11250 BR07G18270 BR08G26940 ... | 4 | |
| Tree-based ortholog | 1-to-many | BR08G26940 BR06G11250 BR09G47310 | 3 | ||
| Anchor point | many-to-many | BR01G05900 BR06G11250 BR07G18270 ... | 7 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR09G47310 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-1 | CRU_001G15040 | 1 | |
| Tree-based ortholog | 1-to-1 | CRU_001G15040 | 1 | ||
| Anchor point | many-to-many | CRU_001G15040 CRU_002G25290 CRU_007G08210 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_001G15040 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00462G00040 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00462G00040 | 1 | ||
| Anchor point | many-to-many | CP00010G00750 CP00127G00180 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00462G00040 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-1 | CR01G07100 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR01G07100 | 1 | ||
| Citrullus lanatus | Tree-based ortholog | 1-to-1 | CL11G09870 | 1 | |
| Anchor point | many-to-many | CL09G02890 CL08G13450 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL08G13450 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS01438G00020 | 1 | |
| Tree-based ortholog | 1-to-1 | CS01438G00020 | 1 | ||
| Anchor point | many-to-1 | CS00025G01530 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS01438G00020 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00060G01110 | 1 | |
| Tree-based ortholog | 1-to-1 | CM00060G01110 | 1 | ||
| Anchor point | many-to-many | CM00014G06620 CM00060G01110 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00060G01110 | 1 | ||
| Eucalyptus grandis | Tree-based ortholog | 1-to-many | EG1453G00010 EG0010G26610 EG0010G26570 ... | 5 | |
| Anchor point | many-to-many | EG0003G20950 EG0010G26560 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0003G15410 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV6G24710 | 1 | |
| Tree-based ortholog | 1-to-1 | FV6G24710 | 1 | ||
| Anchor point | many-to-many | FV6G24710 FV2G52230 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV6G24710 | 1 | ||
| Glycine max | Tree-based ortholog | 1-to-many | GM07G02705 GM08G23284 GM08G23272 | 3 | |
| Anchor point | many-to-many | GM07G02705 GM12G16803 GM06G06630 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM06G06640 GM06G06630 GM04G06560 ... | 5 | ||
| Gossypium raimondii | Tree-based ortholog | 1-to-many | GR09G06200 GR09G06190 GR10G11800 ... | 4 | |
| Anchor point | many-to-many | GR09G06190 GR10G11800 GR01G03720 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR10G11800 | 1 | ||
| Lotus japonicus | Tree-based ortholog | 1-to-many | LJ1G026130 LJ5G006990 | 2 | |
| Anchor point | many-to-1 | LJ1G026130 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ5G006990 | 1 | ||
| Malus domestica | Tree-based ortholog | 1-to-many | MD00G270320 MD12G017520 | 2 | |
| Anchor point | many-to-1 | MD08G006530 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD08G006530 MD00G452240 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-1 | ME02915G00300 | 1 | |
| Tree-based ortholog | 1-to-many | ME02915G00300 ME09305G00080 | 2 | ||
| Anchor point | many-to-many | ME00847G02200 ME03049G00370 ME02915G00300 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME02915G00300 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT4G006875 | 1 | |
| Tree-based ortholog | 1-to-many | MT4G006875 MT4G030130 | 2 | ||
| Anchor point | many-to-many | MT3G106100 MT1G014300 MT4G006875 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT1G014270 | 1 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | 1-to-many | OS04G25960 OS04G42320 OS02G39920 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS02G39920 | 1 | ||
| Ostreococcus lucimarinus | Tree-based ortholog | 1-to-1 | OL01G05550 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL01G05550 | 1 | ||
| Physcomitrella patens | Tree-based ortholog | 1-to-1 | PP00032G00200 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00241G00240 PP00010G00060 | 2 | ||
| Populus trichocarpa | Orthologous gene family | many-to-1 | PT01G04650 | 1 | |
| Tree-based ortholog | 1-to-many | PT01G04650 PT03G18130 | 2 | ||
| Anchor point | many-to-many | PT03G18130 PT01G04650 PT06G18670 ... | 6 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT03G18130 PT01G04650 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_003G08430 | 1 | |
| Tree-based ortholog | 1-to-1 | PPE_003G08430 | 1 | ||
| Anchor point | many-to-many | PPE_001G39950 PPE_003G08430 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_001G39950 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC29588G00100 | 1 | |
| Tree-based ortholog | 1-to-many | RC29588G00100 RC29588G00080 | 2 | ||
| Anchor point | many-to-many | RC29848G01030 RC29588G00080 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29588G00100 | 1 | ||
| Solanum lycopersicum | Tree-based ortholog | 1-to-many | SL03G117010 SL03G116970 SL03G116940 ... | 6 | |
| Anchor point | many-to-many | SL06G068430 SL03G116920 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL03G117010 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST03G030460 | 1 | |
| Tree-based ortholog | 1-to-many | ST03G030460 ST05G018710 ST03G030420 ... | 6 | ||
| Anchor point | many-to-many | ST06G023940 ST03G030370 ST06G024760 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST06G024760 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP1G14250 TP5G34950 | 2 | |
| Tree-based ortholog | 1-to-1 | TP1G14250 | 1 | ||
| Anchor point | many-to-many | TP1G14250 TP7G29700 TP5G34950 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP1G14250 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0006G03930 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0006G03930 | 1 | ||
| Anchor point | many-to-many | TC0009G01630 TC0006G03930 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0006G03930 | 1 | ||
| Vitis vinifera | Tree-based ortholog | 1-to-many | VV00G20210 VV09G11330 VV00G04210 | 3 | |
| Anchor point | many-to-many | VV09G11330 VV11G07090 VV04G12440 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV04G12440 | 1 | ||
| Zea mays | Tree-based ortholog | 1-to-many | ZM02G10840 ZM10G19760 ZM05G33570 ... | 5 | |
| Anchor point | many-to-1 | ZM02G10840 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM04G18500 ZM05G33570 | 2 |