Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AL7G26400
(Arabidopsis lyrata)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis lyrata | Orthologous gene family | AL7G26400 | 1 |  |
| Tree-based ortholog | AL3G13010 AL7G26400 AL1G08700 ... | 17 | ||
| Best-Hits-and-Inparalogs(BHI)family | AL7G26400 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | 1-to-1 | ATR_00155G00160 | 1 | |
| Tree-based ortholog | many-to-many | ATR_00078G01960 ATR_00062G01620 ATR_00155G00160 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00155G00160 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | 1-to-1 | AT4G16660 | 1 | |
| Tree-based ortholog | many-to-many | AT2G32120 AT4G16660 AT1G11660 ... | 11 | ||
| Anchor point | N/A | AT4G16660 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT4G16660 | 1 | ||
| Beta vulgaris | Orthologous gene family | 1-to-1 | BV5G15730 | 1 | |
| Tree-based ortholog | many-to-many | BV9G16600 BV5G15730 BV1G11790 ... | 12 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV5G15730 | 1 | ||
| Brassica rapa | Orthologous gene family | 1-to-many | BR01G19250 BR03G43570 | 2 | |
| Tree-based ortholog | many-to-many | BR01G24430 BR01G36480 BR03G43570 ... | 14 | ||
| Anchor point | N/A | BR03G43570 BR01G19250 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR03G43570 | 1 | ||
| Capsella rubella | Orthologous gene family | 1-to-1 | CRU_007G23690 | 1 | |
| Tree-based ortholog | many-to-many | CRU_004G13060 CRU_003G11400 CRU_001G10750 ... | 9 | ||
| Anchor point | N/A | CRU_007G23690 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_007G23690 | 1 | ||
| Carica papaya | Orthologous gene family | 1-to-1 | CP00029G01690 | 1 | |
| Tree-based ortholog | many-to-many | CP00260G00030 CP00029G01690 CP00058G01090 ... | 8 | ||
| Anchor point | N/A | CP00029G01690 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00029G01690 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | 1-to-1 | CR10G04830 | 1 | |
| Tree-based ortholog | many-to-many | CR02G01770 CR16G09950 CR02G01790 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR10G04830 | 1 | ||
| Citrullus lanatus | Orthologous gene family | 1-to-1 | CL11G10780 | 1 | |
| Tree-based ortholog | many-to-many | CL09G01860 CL11G05430 CL04G08180 ... | 8 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL11G10780 | 1 | ||
| Citrus sinensis | Orthologous gene family | 1-to-1 | CS00036G01170 | 1 | |
| Tree-based ortholog | many-to-many | CS01021G00020 CS00103G00220 CS00799G00010 ... | 16 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00036G01170 | 1 | ||
| Cucumis melo | Orthologous gene family | 1-to-1 | CM00092G00510 | 1 | |
| Tree-based ortholog | many-to-many | CM00048G01830 CM00003G00170 CM00102G00040 ... | 7 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00092G00510 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | 1-to-1 | EG0003G10470 | 1 | |
| Tree-based ortholog | many-to-many | EG0006G06420 EG0010G26770 EG3673G00010 ... | 10 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0003G10470 | 1 | ||
| Fragaria vesca | Orthologous gene family | 1-to-1 | FV6G36470 | 1 | |
| Tree-based ortholog | many-to-many | FV3G24870 FV5G01030 FV2G05650 ... | 26 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV6G36470 | 1 | ||
| Glycine max | Orthologous gene family | 1-to-many | GM06G00310 GM13G10700 GM20G16070 | 3 | |
| Tree-based ortholog | many-to-many | GM14G02740 GM11G14950 GM18G05610 ... | 23 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM13G10700 GM20G16070 | 2 | ||
| Gossypium raimondii | Orthologous gene family | 1-to-many | GR10G21210 GR11G22420 | 2 | |
| Tree-based ortholog | many-to-many | GR06G17400 GR06G09850 GR13G12530 ... | 20 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR10G21210 | 1 | ||
| Lotus japonicus | Orthologous gene family | 1-to-1 | LJ6G001790 | 1 | |
| Tree-based ortholog | many-to-many | LJ1G040160 LJ1G045640 LJ1G039800 ... | 12 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ6G001790 | 1 | ||
| Malus domestica | Orthologous gene family | 1-to-many | MD08G015100 MD17G011120 | 2 | |
| Tree-based ortholog | many-to-many | MD00G120610 MD02G021160 MD00G438460 ... | 30 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD08G015100 MD17G011120 | 2 | ||
| Manihot esculenta | Orthologous gene family | 1-to-1 | ME10242G00020 | 1 | |
| Tree-based ortholog | many-to-many | ME10242G00020 ME08265G01860 ME06705G00290 ... | 15 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME10242G00020 | 1 | ||
| Medicago truncatula | Orthologous gene family | 1-to-1 | MT3G081170 | 1 | |
| Tree-based ortholog | many-to-many | MT4G107920 MT7G025790 MT7G026110 ... | 66 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT3G081170 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | 1-to-1 | OS02G48110 | 1 | |
| Tree-based ortholog | many-to-many | OS03G16860 OS11G47760 OS03G16920 ... | 11 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS02G48110 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | 1-to-1 | OL05G04370 | 1 | |
| Tree-based ortholog | many-to-many | OL06G00760 OL02G03650 OL16G02240 ... | 8 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL05G04370 | 1 | ||
| Physcomitrella patens | Orthologous gene family | 1-to-1 | PP00034G00550 | 1 | |
| Tree-based ortholog | many-to-many | PP00034G00550 PP00067G01040 PP00351G00070 ... | 13 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00034G00550 | 1 | ||
| Populus trichocarpa | Orthologous gene family | 1-to-many | PT06G02210 PT16G01980 | 2 | |
| Tree-based ortholog | many-to-many | PT10G08860 PT08G05460 PT02G09850 ... | 19 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT06G02210 PT16G01980 | 2 | ||
| Prunus persica | Orthologous gene family | 1-to-1 | PPE_003G17000 | 1 | |
| Tree-based ortholog | many-to-many | PPE_007G13070 PPE_007G12980 PPE_007G13060 ... | 26 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_003G17000 | 1 | ||
| Ricinus communis | Orthologous gene family | 1-to-1 | RC29724G00470 | 1 | |
| Tree-based ortholog | many-to-many | RC29726G00150 RC29887G00060 RC29666G00050 ... | 9 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29724G00470 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | 1-to-1 | SL07G043560 | 1 | |
| Tree-based ortholog | many-to-many | SL07G043560 SL09G010630 SL10G086410 ... | 13 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL07G043560 | 1 | ||
| Solanum tuberosum | Orthologous gene family | 1-to-1 | ST07G016650 | 1 | |
| Tree-based ortholog | many-to-many | ST03G031090 ST12G021940 ST04G010180 ... | 15 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST07G016650 | 1 | ||
| Thellungiella parvula | Tree-based ortholog | many-to-many | TP3G07820 TP6G40020 TP4G14520 ... | 9 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP7G15270 | 1 | ||
| Theobroma cacao | Orthologous gene family | 1-to-1 | TC0010G12920 | 1 | |
| Tree-based ortholog | many-to-many | TC0006G08720 TC0009G31820 TC0004G23330 ... | 12 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0010G12920 | 1 | ||
| Vitis vinifera | Orthologous gene family | 1-to-many | VV04G04140 VV04G11160 VV09G10950 | 3 | |
| Tree-based ortholog | many-to-many | VV04G11160 VV04G04140 VV09G05280 ... | 9 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | VV04G11160 VV09G10950 | 2 | ||
| Zea mays | Orthologous gene family | 1-to-many | ZM04G22500 ZM04G22530 ZM05G38240 | 3 | |
| Tree-based ortholog | many-to-many | ZM01G45300 ZM05G38240 ZM09G25800 ... | 16 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM05G38240 | 1 |