Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AL3G11500
(Arabidopsis lyrata)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis lyrata | Orthologous gene family | AL3G11500 AL6G05110 | 2 |  |
| Tree-based ortholog | AL3G11500 | 1 | ||
| Anchor point | AL6G05110 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AL3G11500 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00153G00010 | 1 | |
| Tree-based ortholog | 1-to-1 | ATR_00153G00010 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00153G00010 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT3G11070 AT5G05520 | 2 | |
| Tree-based ortholog | 1-to-1 | AT3G11070 | 1 | ||
| Anchor point | 1-to-many | AT5G05520 AT3G11070 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT3G11070 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV0G38140 | 1 | |
| Tree-based ortholog | 1-to-1 | BV0G38140 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G38140 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR03G32350 BR05G31430 BR10G23840 | 3 | |
| Tree-based ortholog | 1-to-many | BR05G31430 BR03G32350 | 2 | ||
| Anchor point | 1-to-many | BR03G32350 BR05G31430 BR10G23840 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR03G32350 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_003G09920 CRU_006G04310 | 2 | |
| Tree-based ortholog | 1-to-1 | CRU_003G09920 | 1 | ||
| Anchor point | 1-to-many | CRU_003G09920 CRU_006G04310 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_003G09920 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00019G01460 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00019G01460 | 1 | ||
| Anchor point | 1-to-1 | CP00019G01460 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00019G01460 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR06G15280 | 1 | |
| Tree-based ortholog | 1-to-1 | CR06G15280 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR06G15280 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL08G07540 | 1 | |
| Tree-based ortholog | 1-to-1 | CL08G07540 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL08G07540 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00021G00290 | 1 | |
| Tree-based ortholog | 1-to-1 | CS00021G00290 | 1 | ||
| Anchor point | 1-to-1 | CS00021G00290 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00021G00290 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00040G00530 | 1 | |
| Tree-based ortholog | 1-to-1 | CM00040G00530 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00040G00530 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0010G01600 | 1 | |
| Tree-based ortholog | 1-to-1 | EG0010G01600 | 1 | ||
| Anchor point | 1-to-1 | EG0010G01600 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0010G01600 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV7G29910 | 1 | |
| Tree-based ortholog | 1-to-1 | FV7G29910 | 1 | ||
| Anchor point | 1-to-1 | FV7G29910 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV7G29910 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM02G43160 GM11G35531 GM14G06250 | 3 | |
| Tree-based ortholog | 1-to-many | GM11G35531 GM14G06250 GM02G43160 | 3 | ||
| Anchor point | 1-to-many | GM11G35531 GM14G06250 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM02G43160 GM14G06250 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR02G07280 GR10G19580 | 2 | |
| Tree-based ortholog | 1-to-many | GR02G07280 GR10G19580 | 2 | ||
| Anchor point | 1-to-1 | GR10G19580 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR10G19580 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ6G005060 | 1 | |
| Tree-based ortholog | 1-to-1 | LJ6G005060 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ6G005060 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD01G015080 MD04G002200 | 2 | |
| Tree-based ortholog | 1-to-many | MD04G002200 MD01G015080 | 2 | ||
| Anchor point | 1-to-1 | MD01G015080 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD01G015080 MD04G002200 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME00435G00040 ME10689G00580 | 2 | |
| Tree-based ortholog | 1-to-many | ME00435G00040 ME10689G00580 | 2 | ||
| Anchor point | 1-to-1 | ME10689G00580 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME10689G00580 ME00435G00040 | 2 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT3G071450 MT5G083050 | 2 | |
| Tree-based ortholog | 1-to-many | MT3G071450 MT5G083050 | 2 | ||
| Anchor point | 1-to-many | MT3G071450 MT5G083050 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT5G083050 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS05G39390 | 1 | |
| Tree-based ortholog | 1-to-1 | OS05G39390 | 1 | ||
| Anchor point | 1-to-many | OS11G01490 OS12G01500 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS05G39390 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL06G00140 | 1 | |
| Tree-based ortholog | 1-to-1 | OL06G00140 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL06G00140 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00018G01020 PP00294G00140 | 2 | |
| Tree-based ortholog | 1-to-many | PP00018G01020 PP00294G00140 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00018G01020 PP00294G00140 | 2 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT08G07180 PT10G18560 | 2 | |
| Tree-based ortholog | 1-to-many | PT10G18560 PT08G07180 | 2 | ||
| Anchor point | 1-to-many | PT08G07180 PT10G18560 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT08G07180 PT10G18560 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_002G24400 | 1 | |
| Tree-based ortholog | 1-to-1 | PPE_002G24400 | 1 | ||
| Anchor point | 1-to-1 | PPE_002G24400 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_002G24400 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC29814G00340 | 1 | |
| Tree-based ortholog | 1-to-1 | RC29814G00340 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29814G00340 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL04G079270 | 1 | |
| Tree-based ortholog | 1-to-1 | SL04G079270 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL04G079270 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST04G032440 | 1 | |
| Tree-based ortholog | 1-to-1 | ST04G032440 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST04G032440 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP3G09400 TP6G37330 | 2 | |
| Tree-based ortholog | 1-to-1 | TP3G09400 | 1 | ||
| Anchor point | 1-to-many | TP6G37330 TP3G09400 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP3G09400 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-many | TC0007G07230 TC0010G01190 | 2 | |
| Tree-based ortholog | 1-to-many | TC0007G07230 TC0010G01190 | 2 | ||
| Anchor point | 1-to-1 | TC0010G01190 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0010G01190 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV13G10120 | 1 | |
| Tree-based ortholog | 1-to-1 | VV13G10120 | 1 | ||
| Anchor point | 1-to-1 | VV13G10120 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV13G10120 | 1 | ||
| Zea mays | Orthologous gene family | many-to-1 | ZM08G18020 | 1 | |
| Tree-based ortholog | 1-to-many | ZM08G18020 ZM08G32550 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM08G18020 | 1 |