Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AL1G35870
(Arabidopsis lyrata)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis lyrata | Orthologous gene family | AL1G35870 AL5G04380 | 2 |  |
| Tree-based ortholog | AL1G35870 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AL1G35870 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-many | ATR_00002G00650 ATR_00180G00290 | 2 | |
| Tree-based ortholog | 1-to-1 | ATR_00180G00290 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00180G00290 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-1 | AT3G25860 | 1 | |
| Tree-based ortholog | 1-to-1 | AT1G34430 | 1 | ||
| Anchor point | N/A | AT1G34430 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G34430 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-many | BV1G02940 BV6G00390 | 2 | |
| Tree-based ortholog | 1-to-1 | BV1G02940 | 1 | ||
| Anchor point | N/A | BV1G02940 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV1G02940 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-1 | BR09G25450 | 1 | |
| Tree-based ortholog | 1-to-1 | BR09G25450 | 1 | ||
| Anchor point | N/A | BR09G25450 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR09G25450 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_001G30990 CRU_005G03360 | 2 | |
| Tree-based ortholog | 1-to-1 | CRU_001G30990 | 1 | ||
| Anchor point | N/A | CRU_001G30990 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_001G30990 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00066G00560 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00066G00560 | 1 | ||
| Anchor point | N/A | CP00066G00560 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00066G00560 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-1 | CR03G03960 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR03G03960 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL09G09870 | 1 | |
| Tree-based ortholog | 1-to-many | CL09G09870 CL09G09890 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL09G09870 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-many | CS00002G01960 CS00019G00430 | 2 | |
| Tree-based ortholog | 1-to-1 | CS00002G01960 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00002G01960 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-many | CM00016G05700 CM00061G00310 | 2 | |
| Tree-based ortholog | 1-to-1 | CM00061G00310 | 1 | ||
| Anchor point | N/A | CM00061G00310 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00061G00310 | 1 | ||
| Eucalyptus grandis | Tree-based ortholog | 1-to-1 | EG0006G35400 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0007G17780 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV0G01850 | 1 | |
| Tree-based ortholog | 1-to-1 | FV2G19880 | 1 | ||
| Anchor point | N/A | FV2G19880 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV2G19880 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM10G35960 GM20G31630 | 2 | |
| Tree-based ortholog | 1-to-many | GM10G35960 GM20G31630 | 2 | ||
| Anchor point | N/A | GM20G31630 GM10G35960 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM20G31630 GM10G35960 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-1 | GR09G26410 | 1 | |
| Tree-based ortholog | 1-to-1 | GR09G26410 | 1 | ||
| Anchor point | N/A | GR09G26410 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR09G26410 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ5G030850 | 1 | |
| Tree-based ortholog | 1-to-1 | LJ5G030850 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ5G030850 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G012960 MD00G411000 MD09G019890 ... | 4 | |
| Tree-based ortholog | 1-to-many | MD07G004270 MD06G018900 MD00G473880 ... | 7 | ||
| Anchor point | N/A | MD09G019890 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD09G019890 MD10G004310 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME06814G00300 ME07519G00020 | 2 | |
| Tree-based ortholog | 1-to-many | ME06814G00300 ME07519G00020 | 2 | ||
| Anchor point | N/A | ME06814G00300 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME06814G00300 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT1G111140 | 1 | |
| Tree-based ortholog | 1-to-1 | MT1G096240 | 1 | ||
| Anchor point | N/A | MT1G096240 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT1G096240 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS12G08170 | 1 | |
| Tree-based ortholog | 1-to-1 | OS12G08170 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS12G08170 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL03G01030 | 1 | |
| Tree-based ortholog | 1-to-1 | OL03G01030 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL03G01030 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00223G00270 PP00291G00340 PP00351G00100 | 3 | |
| Tree-based ortholog | 1-to-many | PP00223G00270 PP00351G00100 PP00291G00340 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00223G00270 PP00291G00340 PP00351G00100 | 3 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT13G11430 PT19G08490 | 2 | |
| Tree-based ortholog | 1-to-many | PT13G11430 PT19G08490 | 2 | ||
| Anchor point | N/A | PT19G08490 PT13G11430 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT19G08490 PT13G11430 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-many | PPE_001G31890 PPE_008G06640 | 2 | |
| Tree-based ortholog | 1-to-1 | PPE_008G06640 | 1 | ||
| Anchor point | N/A | PPE_008G06640 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_008G06640 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC29728G00430 | 1 | |
| Tree-based ortholog | 1-to-1 | RC29728G00430 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29728G00430 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL11G017250 | 1 | |
| Tree-based ortholog | 1-to-1 | SL11G017250 | 1 | ||
| Anchor point | N/A | SL11G017250 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL11G017250 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST11G013600 | 1 | |
| Tree-based ortholog | 1-to-1 | ST11G013600 | 1 | ||
| Anchor point | N/A | ST11G013600 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST11G013600 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP1G29620 | 1 | |
| Tree-based ortholog | 1-to-1 | TP1G29620 | 1 | ||
| Anchor point | N/A | TP1G29620 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP1G29620 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0002G35480 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0008G18120 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0008G18120 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV18G15270 | 1 | |
| Tree-based ortholog | 1-to-1 | VV18G15270 | 1 | ||
| Anchor point | N/A | VV18G15270 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV18G15270 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM03G19040 ZM10G03220 | 2 | |
| Tree-based ortholog | 1-to-many | ZM03G19040 ZM10G03220 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM03G19040 ZM10G03220 | 2 |