Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AL1G31370
(Arabidopsis lyrata)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis lyrata | Orthologous gene family | AL1G31370 AL7G34050 | 2 |  |
| Tree-based ortholog | AL1G31370 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AL1G31370 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Tree-based ortholog | 1-to-many | ATR_00029G01870 ATR_00092G00350 | 2 | |
| Anchor point | N/A | ATR_00092G00350 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00029G01870 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT1G30330 AT5G37020 | 2 | |
| Tree-based ortholog | 1-to-1 | AT1G30330 | 1 | ||
| Anchor point | N/A | AT1G30330 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G30330 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-many | BV4G04860 BV9G10190 | 2 | |
| Tree-based ortholog | 1-to-1 | BV4G04860 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV4G04860 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR04G07520 BR06G14320 BR07G10810 ... | 6 | |
| Tree-based ortholog | 1-to-1 | BR08G20750 | 1 | ||
| Anchor point | N/A | BR08G20750 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR07G23650 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_001G27340 CRU_007G30890 | 2 | |
| Tree-based ortholog | 1-to-1 | CRU_001G27340 | 1 | ||
| Anchor point | N/A | CRU_001G27340 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_001G27340 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00017G00460 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00017G00470 | 1 | ||
| Anchor point | N/A | CP00017G00460 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00017G00470 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-many | CL01G14880 CL01G24920 | 2 | |
| Tree-based ortholog | 1-to-1 | CL03G06240 | 1 | ||
| Anchor point | N/A | CL01G24920 CL03G06240 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL03G06240 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-many | CS00010G00700 CS00041G00510 | 2 | |
| Tree-based ortholog | 1-to-1 | CS00010G00700 | 1 | ||
| Anchor point | N/A | CS00010G00700 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00010G00700 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-many | CM00001G08990 CM00007G01220 CM00074G00250 | 3 | |
| Tree-based ortholog | 1-to-1 | CM00001G08990 | 1 | ||
| Anchor point | N/A | CM00001G08990 CM00007G01220 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00001G08990 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-many | EG0001G17170 EG0004G01930 | 2 | |
| Tree-based ortholog | 1-to-1 | EG0004G01930 | 1 | ||
| Anchor point | N/A | EG0004G01930 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0004G01930 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV3G05860 | 1 | |
| Tree-based ortholog | 1-to-many | FV3G05860 FV1G28300 | 2 | ||
| Anchor point | N/A | FV3G05860 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV3G05860 | 1 | ||
| Glycine max | Orthologous gene family | many-to-1 | GM14G38940 | 1 | |
| Tree-based ortholog | 1-to-many | GM08G10550 GM05G27580 GM15G09750 ... | 4 | ||
| Anchor point | N/A | GM08G10550 GM05G27580 GM15G09750 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM13G29320 GM15G09750 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR02G12440 GR06G00870 GR08G09720 ... | 5 | |
| Tree-based ortholog | 1-to-1 | GR09G15270 | 1 | ||
| Anchor point | N/A | GR09G15270 GR11G04820 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR09G15270 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-many | LJ4G036930 LJ4G039800 | 2 | |
| Tree-based ortholog | 1-to-1 | LJ4G036930 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ4G036930 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G146890 MD05G007300 MD15G015950 ... | 4 | |
| Tree-based ortholog | 1-to-many | MD05G007870 MD05G007300 MD17G021330 | 3 | ||
| Anchor point | N/A | MD05G007300 MD05G007870 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD05G007300 MD05G007870 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME00318G00120 ME04251G00300 | 2 | |
| Tree-based ortholog | 1-to-many | ME09702G00130 ME07520G00690 | 2 | ||
| Anchor point | N/A | ME04251G00300 ME00318G00120 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME04251G00300 ME00318G00120 | 2 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT2G018690 MT2G043250 MT3G064050 ... | 4 | |
| Tree-based ortholog | 1-to-many | MT8G079492 MT2G018690 | 2 | ||
| Anchor point | N/A | MT2G018690 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT2G018690 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS02G06910 OS04G57610 OS06G46410 ... | 4 | |
| Tree-based ortholog | 1-to-many | OS04G57610 OS12G41950 OS02G06910 ... | 4 | ||
| Anchor point | N/A | OS12G41950 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS02G06910 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00006G01070 PP00048G00560 PP00086G00010 ... | 6 | |
| Tree-based ortholog | 1-to-many | PP00133G00340 PP00006G01070 PP00086G00020 ... | 8 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00006G01070 PP00086G00010 PP00133G00340 ... | 6 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT01G35850 PT02G05500 PT04G07820 ... | 7 | |
| Tree-based ortholog | 1-to-many | PT04G07820 PT17G14100 | 2 | ||
| Anchor point | N/A | PT11G09190 PT01G35850 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT11G09190 PT01G35850 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-many | PPE_001G37690 PPE_003G16500 PPE_004G08170 ... | 4 | |
| Tree-based ortholog | 1-to-1 | PPE_004G08170 | 1 | ||
| Anchor point | N/A | PPE_004G08170 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_004G08170 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC29599G00080 | 1 | |
| Tree-based ortholog | 1-to-1 | RC29769G00140 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29769G00140 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL00G196060 SL02G037530 SL03G031970 ... | 4 | |
| Tree-based ortholog | 1-to-many | SL03G031970 SL02G037530 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL03G031970 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-many | ST02G008050 ST02G008070 ST03G008610 ... | 5 | |
| Tree-based ortholog | 1-to-many | ST03G008610 ST02G008060 ST02G008120 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ST07G016700 ST12G011210 | 2 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP1G17650 TP1G26190 TP5G20660 | 3 | |
| Tree-based ortholog | 1-to-1 | TP1G26190 | 1 | ||
| Anchor point | N/A | TP1G26190 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP1G26190 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-many | TC0001G16030 TC0004G05570 TC0006G14210 | 3 | |
| Tree-based ortholog | 1-to-1 | TC0006G14210 | 1 | ||
| Anchor point | N/A | TC0006G14210 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0006G14210 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-many | VV04G06940 VV11G02170 VV11G10060 | 3 | |
| Tree-based ortholog | 1-to-1 | VV04G06930 | 1 | ||
| Anchor point | N/A | VV10G04790 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV12G03620 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM01G29370 ZM02G00840 ZM03G16540 ... | 6 | |
| Tree-based ortholog | 1-to-many | ZM02G00840 ZM10G26230 ZM03G16540 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM04G39430 | 1 |