Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AL1G19380
(Arabidopsis lyrata)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis lyrata | Orthologous gene family | AL1G19380 AL2G17060 AL2G22830 | 3 |  |
| Tree-based ortholog | AL1G19380 | 1 | ||
| Anchor point | AL2G22810 AL2G17060 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | AL1G19380 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Tree-based ortholog | 1-to-1 | ATR_00010G00430 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00010G00430 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT1G18470 AT1G68820 AT1G73950 | 3 | |
| Tree-based ortholog | 1-to-1 | AT1G18470 | 1 | ||
| Anchor point | many-to-many | AT1G68820 AT1G18470 AT1G73930 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G18470 | 1 | ||
| Beta vulgaris | Tree-based ortholog | 1-to-1 | BV0G58750 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G58750 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR07G25780 BR07G29660 BR09G46150 | 3 | |
| Tree-based ortholog | 1-to-1 | BR09G46150 | 1 | ||
| Anchor point | many-to-many | BR06G13120 BR08G26050 BR07G29660 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR09G46150 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_001G17320 CRU_002G14500 CRU_002G19550 | 3 | |
| Tree-based ortholog | 1-to-1 | CRU_001G17320 | 1 | ||
| Anchor point | many-to-many | CRU_002G14500 CRU_001G17320 CRU_002G19530 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_001G17320 | 1 | ||
| Carica papaya | Tree-based ortholog | 1-to-1 | CP00549G00030 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00053G01160 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-1 | CR14G05970 | 1 | |
| Citrullus lanatus | Tree-based ortholog | 1-to-1 | CL06G15550 | 1 | |
| Anchor point | many-to-1 | CL06G15540 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL06G15550 | 1 | ||
| Citrus sinensis | Tree-based ortholog | 1-to-1 | CS00035G00460 | 1 | |
| Anchor point | many-to-1 | CS00019G00770 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00035G00460 | 1 | ||
| Cucumis melo | Tree-based ortholog | 1-to-1 | CM00030G02170 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00030G02170 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0011G22160 | 1 | |
| Tree-based ortholog | 1-to-1 | EG0011G22160 | 1 | ||
| Anchor point | many-to-1 | EG0002G06050 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0011G22160 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV0G02440 | 1 | |
| Tree-based ortholog | 1-to-1 | FV5G10760 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV5G10760 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM05G07960 GM17G13040 | 2 | |
| Tree-based ortholog | 1-to-many | GM05G07960 GM17G13040 | 2 | ||
| Anchor point | many-to-many | GM05G07960 GM17G13030 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM17G13040 GM05G07960 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-1 | GR06G06320 | 1 | |
| Tree-based ortholog | 1-to-1 | GR06G06320 | 1 | ||
| Anchor point | many-to-many | GR06G06320 GR07G00740 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR06G06320 | 1 | ||
| Lotus japonicus | Tree-based ortholog | 1-to-1 | LJ4G030560 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ4G030560 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD13G003070 MD16G002070 | 2 | |
| Tree-based ortholog | 1-to-many | MD06G017570 MD14G020790 | 2 | ||
| Anchor point | many-to-many | MD14G020790 MD06G017570 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD14G020790 | 1 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME01686G00010 ME07762G00390 | 2 | |
| Tree-based ortholog | 1-to-many | ME01686G00010 ME07762G00390 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME07762G00390 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT4G111965 | 1 | |
| Tree-based ortholog | 1-to-1 | MT4G111965 | 1 | ||
| Anchor point | many-to-1 | MT4G111965 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT4G111965 | 1 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | 1-to-1 | OS03G49900 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS03G49900 | 1 | ||
| Physcomitrella patens | Tree-based ortholog | 1-to-1 | PP00079G00750 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00079G00750 | 1 | ||
| Populus trichocarpa | Tree-based ortholog | 1-to-many | PT15G05030 PT12G06010 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT15G05030 PT12G06010 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_005G22000 | 1 | |
| Tree-based ortholog | 1-to-1 | PPE_005G22000 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_005G22000 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC30174G03990 | 1 | |
| Tree-based ortholog | 1-to-1 | RC30174G03990 | 1 | ||
| Anchor point | many-to-many | RC30174G03980 RC29738G00450 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30174G03990 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL03G119760 | 1 | |
| Tree-based ortholog | 1-to-1 | SL03G119760 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL03G119760 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST03G033310 | 1 | |
| Tree-based ortholog | 1-to-1 | ST03G033310 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST03G033310 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP1G16410 TP5G29150 | 2 | |
| Tree-based ortholog | 1-to-1 | TP1G16410 | 1 | ||
| Anchor point | many-to-many | TP5G23930 TP1G16410 TP5G29130 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP1G16410 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0003G02670 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0003G02670 | 1 | ||
| Anchor point | many-to-1 | TC0003G02670 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0003G02670 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV17G05590 | 1 | |
| Tree-based ortholog | 1-to-1 | VV17G05590 | 1 | ||
| Anchor point | many-to-1 | VV17G05610 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV17G05590 | 1 | ||
| Zea mays | Tree-based ortholog | 1-to-many | ZM01G50110 ZM05G05780 ZM07G13740 | 3 | |
| Anchor point | many-to-1 | ZM07G13740 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM05G05780 ZM01G50110 | 2 |