Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- ORTHO03D000106
- Gene count gene family
- 174
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 1 | 2.71% | 0.57% | 0.21 |
Arabidopsis lyrata | 32,670 | 1 | 3.23% | 0.57% | 0.18 |
Capsella rubella | 26,521 | 1 | 2.62% | 0.57% | 0.22 |
Brassica rapa | 40,977 | 5 | 4.05% | 2.87% | 0.71 |
Thellungiella parvula | 25,691 | 2 | 2.54% | 1.15% | 0.45 |
Carica papaya | 28,027 | 2 | 2.77% | 1.15% | 0.42 |
Gossypium raimondii | 37,587 | 6 | 3.71% | 3.45% | 0.93 |
Theobroma cacao | 29,484 | 4 | 2.91% | 2.3% | 0.79 |
Citrus sinensis | 25,467 | 6 | 2.51% | 3.45% | 1.37 |
Eucalyptus grandis | 36,449 | 9 | 3.6% | 5.17% | 1.44 |
Cucumis melo | 27,514 | 1 | 2.72% | 0.57% | 0.21 |
Citrullus lanatus | 23,477 | 2 | 2.32% | 1.15% | 0.5 |
Prunus persica | 27,864 | 5 | 2.75% | 2.87% | 1.04 |
Malus domestica | 63,546 | 5 | 6.27% | 2.87% | 0.46 |
Fragaria vesca | 34,809 | 3 | 3.44% | 1.72% | 0.5 |
Lotus japonicus | 29,598 | 14 | 2.92% | 8.05% | 2.76 |
Medicago truncatula | 50,893 | 21 | 5.03% | 12.07% | 2.4 |
Glycine max | 54,257 | 13 | 5.36% | 7.47% | 1.39 |
Ricinus communis | 31,221 | 2 | 3.08% | 1.15% | 0.37 |
Manihot esculenta | 30,748 | 7 | 3.04% | 4.02% | 1.32 |
Populus trichocarpa | 41,434 | 6 | 4.09% | 3.45% | 0.84 |
Vitis vinifera | 26,504 | 13 | 2.62% | 7.47% | 2.85 |
Solanum lycopersicum | 34,813 | 4 | 3.44% | 2.3% | 0.67 |
Solanum tuberosum | 35,085 | 9 | 3.46% | 5.17% | 1.49 |
Beta vulgaris | 25,625 | 9 | 2.53% | 5.17% | 2.04 |
Zea mays | 39,323 | 1 | 3.88% | 0.57% | 0.15 |
Oryza sativa ssp. japonica | 40,738 | 2 | 4.02% | 1.15% | 0.29 |
Amborella trichopoda | 26,931 | 3 | 2.66% | 1.72% | 0.65 |
Physcomitrella patens | 32,400 | 17 | 3.2% | 9.77% | 3.05 |
Ostreococcus lucimarinus | 7,805 | 0 | 0.77% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 0 | 1.76% | 0% | 0 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 2 | 5.93% | 1.15% | 0.19 |
Camelineae | 3 | 86,607 | 3 | 8.55% | 1.72% | 0.2 |
ND_Brassicaceae1 | 2 | 66,668 | 7 | 6.58% | 4.02% | 0.61 |
Brassicaceae | 5 | 153,275 | 10 | 15.14% | 5.75% | 0.38 |
Brassicales | 6 | 181,302 | 12 | 17.9% | 6.9% | 0.39 |
Malvales | 2 | 67,071 | 10 | 6.62% | 5.75% | 0.87 |
ND_Malvids1 | 8 | 248,373 | 22 | 24.53% | 12.64% | 0.52 |
ND_Malvids2 | 9 | 273,840 | 28 | 27.04% | 16.09% | 0.6 |
Malvids | 10 | 310,289 | 37 | 30.64% | 21.26% | 0.69 |
Benincaseae | 2 | 50,991 | 3 | 5.04% | 1.72% | 0.34 |
Maloideae | 2 | 91,410 | 10 | 9.03% | 5.75% | 0.64 |
Rosaceae | 3 | 126,219 | 13 | 12.46% | 7.47% | 0.6 |
ND_Fabids1 | 5 | 177,210 | 16 | 17.5% | 9.2% | 0.53 |
Galegoids | 2 | 80,491 | 35 | 7.95% | 20.11% | 2.53 |
Papilionoideae | 3 | 134,748 | 48 | 13.31% | 27.59% | 2.07 |
ND_Fabids2 | 8 | 311,958 | 64 | 30.8% | 36.78% | 1.19 |
Euphorbiaceae | 2 | 61,969 | 9 | 6.12% | 5.17% | 0.84 |
Malpighiales | 3 | 103,403 | 15 | 10.21% | 8.62% | 0.84 |
Fabids | 11 | 415,361 | 79 | 41.02% | 45.4% | 1.11 |
Rosids1 | 21 | 725,650 | 116 | 71.66% | 66.67% | 0.93 |
Rosids | 22 | 752,154 | 129 | 74.27% | 74.14% | 1 |
Solanum | 2 | 69,898 | 13 | 6.9% | 7.47% | 1.08 |
ND_Dicots | 24 | 822,052 | 142 | 81.17% | 81.61% | 1.01 |
Dicots | 25 | 847,677 | 151 | 83.71% | 86.78% | 1.04 |
Monocots | 2 | 80,061 | 3 | 7.91% | 1.72% | 0.22 |
Angiosperms | 27 | 927,738 | 154 | 91.61% | 88.51% | 0.97 |
Magnoliophyta | 28 | 954,669 | 157 | 94.27% | 90.23% | 0.96 |
Embryophyta | 29 | 987,069 | 174 | 97.47% | 100% | 1.03 |
Chlorophyta | 2 | 25,624 | 0 | 2.53% | 0% | 0 |
Viridiplantae | 31 | 1,012,693 | 174 | 100% | 100% | 1 |