Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D001312
- Gene count gene family
- 118
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 3 | 2.71% | 2.54% | 0.94 |
Arabidopsis lyrata | 32,670 | 3 | 3.23% | 2.54% | 0.79 |
Capsella rubella | 26,521 | 3 | 2.62% | 2.54% | 0.97 |
Brassica rapa | 40,977 | 4 | 4.05% | 3.39% | 0.84 |
Thellungiella parvula | 25,691 | 3 | 2.54% | 2.54% | 1 |
Carica papaya | 28,027 | 3 | 2.77% | 2.54% | 0.92 |
Gossypium raimondii | 37,587 | 7 | 3.71% | 5.93% | 1.6 |
Theobroma cacao | 29,484 | 3 | 2.91% | 2.54% | 0.87 |
Citrus sinensis | 25,467 | 3 | 2.51% | 2.54% | 1.01 |
Eucalyptus grandis | 36,449 | 2 | 3.6% | 1.69% | 0.47 |
Cucumis melo | 27,514 | 6 | 2.72% | 5.08% | 1.87 |
Citrullus lanatus | 23,477 | 3 | 2.32% | 2.54% | 1.09 |
Prunus persica | 27,864 | 3 | 2.75% | 2.54% | 0.92 |
Malus domestica | 63,546 | 8 | 6.27% | 6.78% | 1.08 |
Fragaria vesca | 34,809 | 2 | 3.44% | 1.69% | 0.49 |
Lotus japonicus | 29,598 | 2 | 2.92% | 1.69% | 0.58 |
Medicago truncatula | 50,893 | 3 | 5.03% | 2.54% | 0.5 |
Glycine max | 54,257 | 8 | 5.36% | 6.78% | 1.26 |
Ricinus communis | 31,221 | 3 | 3.08% | 2.54% | 0.82 |
Manihot esculenta | 30,748 | 5 | 3.04% | 4.24% | 1.39 |
Populus trichocarpa | 41,434 | 5 | 4.09% | 4.24% | 1.04 |
Vitis vinifera | 26,504 | 3 | 2.62% | 2.54% | 0.97 |
Solanum lycopersicum | 34,813 | 5 | 3.44% | 4.24% | 1.23 |
Solanum tuberosum | 35,085 | 4 | 3.46% | 3.39% | 0.98 |
Beta vulgaris | 25,625 | 3 | 2.53% | 2.54% | 1 |
Zea mays | 39,323 | 5 | 3.88% | 4.24% | 1.09 |
Oryza sativa ssp. japonica | 40,738 | 5 | 4.02% | 4.24% | 1.05 |
Amborella trichopoda | 26,931 | 3 | 2.66% | 2.54% | 0.95 |
Physcomitrella patens | 32,400 | 5 | 3.2% | 4.24% | 1.33 |
Ostreococcus lucimarinus | 7,805 | 2 | 0.77% | 1.69% | 2.19 |
Chlamydomonas reinhardtii | 17,819 | 1 | 1.76% | 0.85% | 0.48 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 6 | 5.93% | 5.08% | 0.86 |
Camelineae | 3 | 86,607 | 9 | 8.55% | 7.63% | 0.89 |
ND_Brassicaceae1 | 2 | 66,668 | 7 | 6.58% | 5.93% | 0.9 |
Brassicaceae | 5 | 153,275 | 16 | 15.14% | 13.56% | 0.9 |
Brassicales | 6 | 181,302 | 19 | 17.9% | 16.1% | 0.9 |
Malvales | 2 | 67,071 | 10 | 6.62% | 8.47% | 1.28 |
ND_Malvids1 | 8 | 248,373 | 29 | 24.53% | 24.58% | 1 |
ND_Malvids2 | 9 | 273,840 | 32 | 27.04% | 27.12% | 1 |
Malvids | 10 | 310,289 | 34 | 30.64% | 28.81% | 0.94 |
Benincaseae | 2 | 50,991 | 9 | 5.04% | 7.63% | 1.51 |
Maloideae | 2 | 91,410 | 11 | 9.03% | 9.32% | 1.03 |
Rosaceae | 3 | 126,219 | 13 | 12.46% | 11.02% | 0.88 |
ND_Fabids1 | 5 | 177,210 | 22 | 17.5% | 18.64% | 1.07 |
Galegoids | 2 | 80,491 | 5 | 7.95% | 4.24% | 0.53 |
Papilionoideae | 3 | 134,748 | 13 | 13.31% | 11.02% | 0.83 |
ND_Fabids2 | 8 | 311,958 | 35 | 30.8% | 29.66% | 0.96 |
Euphorbiaceae | 2 | 61,969 | 8 | 6.12% | 6.78% | 1.11 |
Malpighiales | 3 | 103,403 | 13 | 10.21% | 11.02% | 1.08 |
Fabids | 11 | 415,361 | 48 | 41.02% | 40.68% | 0.99 |
Rosids1 | 21 | 725,650 | 82 | 71.66% | 69.49% | 0.97 |
Rosids | 22 | 752,154 | 85 | 74.27% | 72.03% | 0.97 |
Solanum | 2 | 69,898 | 9 | 6.9% | 7.63% | 1.11 |
ND_Dicots | 24 | 822,052 | 94 | 81.17% | 79.66% | 0.98 |
Dicots | 25 | 847,677 | 97 | 83.71% | 82.2% | 0.98 |
Monocots | 2 | 80,061 | 10 | 7.91% | 8.47% | 1.07 |
Angiosperms | 27 | 927,738 | 107 | 91.61% | 90.68% | 0.99 |
Magnoliophyta | 28 | 954,669 | 110 | 94.27% | 93.22% | 0.99 |
Embryophyta | 29 | 987,069 | 115 | 97.47% | 97.46% | 1 |
Chlorophyta | 2 | 25,624 | 3 | 2.53% | 2.54% | 1 |
Viridiplantae | 31 | 1,012,693 | 118 | 100% | 100% | 1 |