Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000426
- Gene count gene family
- 295
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 8 | 2.71% | 2.71% | 1 |
Arabidopsis lyrata | 32,670 | 9 | 3.23% | 3.05% | 0.94 |
Capsella rubella | 26,521 | 8 | 2.62% | 2.71% | 1.03 |
Brassica rapa | 40,977 | 14 | 4.05% | 4.75% | 1.17 |
Thellungiella parvula | 25,691 | 9 | 2.54% | 3.05% | 1.2 |
Carica papaya | 28,027 | 7 | 2.77% | 2.37% | 0.86 |
Gossypium raimondii | 37,587 | 17 | 3.71% | 5.76% | 1.55 |
Theobroma cacao | 29,484 | 8 | 2.91% | 2.71% | 0.93 |
Citrus sinensis | 25,467 | 8 | 2.51% | 2.71% | 1.08 |
Eucalyptus grandis | 36,449 | 9 | 3.6% | 3.05% | 0.85 |
Cucumis melo | 27,514 | 9 | 2.72% | 3.05% | 1.12 |
Citrullus lanatus | 23,477 | 8 | 2.32% | 2.71% | 1.17 |
Prunus persica | 27,864 | 6 | 2.75% | 2.03% | 0.74 |
Malus domestica | 63,546 | 17 | 6.27% | 5.76% | 0.92 |
Fragaria vesca | 34,809 | 7 | 3.44% | 2.37% | 0.69 |
Lotus japonicus | 29,598 | 5 | 2.92% | 1.69% | 0.58 |
Medicago truncatula | 50,893 | 10 | 5.03% | 3.39% | 0.67 |
Glycine max | 54,257 | 20 | 5.36% | 6.78% | 1.26 |
Ricinus communis | 31,221 | 8 | 3.08% | 2.71% | 0.88 |
Manihot esculenta | 30,748 | 11 | 3.04% | 3.73% | 1.23 |
Populus trichocarpa | 41,434 | 20 | 4.09% | 6.78% | 1.66 |
Vitis vinifera | 26,504 | 9 | 2.62% | 3.05% | 1.16 |
Solanum lycopersicum | 34,813 | 10 | 3.44% | 3.39% | 0.99 |
Solanum tuberosum | 35,085 | 8 | 3.46% | 2.71% | 0.78 |
Beta vulgaris | 25,625 | 9 | 2.53% | 3.05% | 1.21 |
Zea mays | 39,323 | 14 | 3.88% | 4.75% | 1.22 |
Oryza sativa ssp. japonica | 40,738 | 12 | 4.02% | 4.07% | 1.01 |
Amborella trichopoda | 26,931 | 8 | 2.66% | 2.71% | 1.02 |
Physcomitrella patens | 32,400 | 5 | 3.2% | 1.69% | 0.53 |
Ostreococcus lucimarinus | 7,805 | 0 | 0.77% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 2 | 1.76% | 0.68% | 0.39 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 17 | 5.93% | 5.76% | 0.97 |
Camelineae | 3 | 86,607 | 25 | 8.55% | 8.47% | 0.99 |
ND_Brassicaceae1 | 2 | 66,668 | 23 | 6.58% | 7.8% | 1.19 |
Brassicaceae | 5 | 153,275 | 48 | 15.14% | 16.27% | 1.07 |
Brassicales | 6 | 181,302 | 55 | 17.9% | 18.64% | 1.04 |
Malvales | 2 | 67,071 | 25 | 6.62% | 8.47% | 1.28 |
ND_Malvids1 | 8 | 248,373 | 80 | 24.53% | 27.12% | 1.11 |
ND_Malvids2 | 9 | 273,840 | 88 | 27.04% | 29.83% | 1.1 |
Malvids | 10 | 310,289 | 97 | 30.64% | 32.88% | 1.07 |
Benincaseae | 2 | 50,991 | 17 | 5.04% | 5.76% | 1.14 |
Maloideae | 2 | 91,410 | 23 | 9.03% | 7.8% | 0.86 |
Rosaceae | 3 | 126,219 | 30 | 12.46% | 10.17% | 0.82 |
ND_Fabids1 | 5 | 177,210 | 47 | 17.5% | 15.93% | 0.91 |
Galegoids | 2 | 80,491 | 15 | 7.95% | 5.08% | 0.64 |
Papilionoideae | 3 | 134,748 | 35 | 13.31% | 11.86% | 0.89 |
ND_Fabids2 | 8 | 311,958 | 82 | 30.8% | 27.8% | 0.9 |
Euphorbiaceae | 2 | 61,969 | 19 | 6.12% | 6.44% | 1.05 |
Malpighiales | 3 | 103,403 | 39 | 10.21% | 13.22% | 1.29 |
Fabids | 11 | 415,361 | 121 | 41.02% | 41.02% | 1 |
Rosids1 | 21 | 725,650 | 218 | 71.66% | 73.9% | 1.03 |
Rosids | 22 | 752,154 | 227 | 74.27% | 76.95% | 1.04 |
Solanum | 2 | 69,898 | 18 | 6.9% | 6.1% | 0.88 |
ND_Dicots | 24 | 822,052 | 245 | 81.17% | 83.05% | 1.02 |
Dicots | 25 | 847,677 | 254 | 83.71% | 86.1% | 1.03 |
Monocots | 2 | 80,061 | 26 | 7.91% | 8.81% | 1.11 |
Angiosperms | 27 | 927,738 | 280 | 91.61% | 94.92% | 1.04 |
Magnoliophyta | 28 | 954,669 | 288 | 94.27% | 97.63% | 1.04 |
Embryophyta | 29 | 987,069 | 293 | 97.47% | 99.32% | 1.02 |
Chlorophyta | 2 | 25,624 | 2 | 2.53% | 0.68% | 0.27 |
Viridiplantae | 31 | 1,012,693 | 295 | 100% | 100% | 1 |