Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000157
- Gene count gene family
- 656
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 2 | 2.71% | 0.3% | 0.11 |
Arabidopsis lyrata | 32,670 | 2 | 3.23% | 0.3% | 0.09 |
Capsella rubella | 26,521 | 25 | 2.62% | 3.81% | 1.45 |
Brassica rapa | 40,977 | 6 | 4.05% | 0.91% | 0.22 |
Thellungiella parvula | 25,691 | 7 | 2.54% | 1.07% | 0.42 |
Carica papaya | 28,027 | 6 | 2.77% | 0.91% | 0.33 |
Gossypium raimondii | 37,587 | 56 | 3.71% | 8.54% | 2.3 |
Theobroma cacao | 29,484 | 37 | 2.91% | 5.64% | 1.94 |
Citrus sinensis | 25,467 | 7 | 2.51% | 1.07% | 0.43 |
Eucalyptus grandis | 36,449 | 17 | 3.6% | 2.59% | 0.72 |
Cucumis melo | 27,514 | 0 | 2.72% | 0% | 0 |
Citrullus lanatus | 23,477 | 0 | 2.32% | 0% | 0 |
Prunus persica | 27,864 | 118 | 2.75% | 17.99% | 6.54 |
Malus domestica | 63,546 | 42 | 6.27% | 6.4% | 1.02 |
Fragaria vesca | 34,809 | 94 | 3.44% | 14.33% | 4.17 |
Lotus japonicus | 29,598 | 14 | 2.92% | 2.13% | 0.73 |
Medicago truncatula | 50,893 | 5 | 5.03% | 0.76% | 0.15 |
Glycine max | 54,257 | 91 | 5.36% | 13.87% | 2.59 |
Ricinus communis | 31,221 | 1 | 3.08% | 0.15% | 0.05 |
Manihot esculenta | 30,748 | 3 | 3.04% | 0.46% | 0.15 |
Populus trichocarpa | 41,434 | 32 | 4.09% | 4.88% | 1.19 |
Vitis vinifera | 26,504 | 5 | 2.62% | 0.76% | 0.29 |
Solanum lycopersicum | 34,813 | 25 | 3.44% | 3.81% | 1.11 |
Solanum tuberosum | 35,085 | 26 | 3.46% | 3.96% | 1.14 |
Beta vulgaris | 25,625 | 16 | 2.53% | 2.44% | 0.96 |
Zea mays | 39,323 | 2 | 3.88% | 0.3% | 0.08 |
Oryza sativa ssp. japonica | 40,738 | 15 | 4.02% | 2.29% | 0.57 |
Amborella trichopoda | 26,931 | 2 | 2.66% | 0.3% | 0.11 |
Physcomitrella patens | 32,400 | 0 | 3.2% | 0% | 0 |
Ostreococcus lucimarinus | 7,805 | 0 | 0.77% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 0 | 1.76% | 0% | 0 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 4 | 5.93% | 0.61% | 0.1 |
Camelineae | 3 | 86,607 | 29 | 8.55% | 4.42% | 0.52 |
ND_Brassicaceae1 | 2 | 66,668 | 13 | 6.58% | 1.98% | 0.3 |
Brassicaceae | 5 | 153,275 | 42 | 15.14% | 6.4% | 0.42 |
Brassicales | 6 | 181,302 | 48 | 17.9% | 7.32% | 0.41 |
Malvales | 2 | 67,071 | 93 | 6.62% | 14.18% | 2.14 |
ND_Malvids1 | 8 | 248,373 | 141 | 24.53% | 21.49% | 0.88 |
ND_Malvids2 | 9 | 273,840 | 148 | 27.04% | 22.56% | 0.83 |
Malvids | 10 | 310,289 | 165 | 30.64% | 25.15% | 0.82 |
Benincaseae | 2 | 50,991 | 0 | 5.04% | 0% | 0 |
Maloideae | 2 | 91,410 | 160 | 9.03% | 24.39% | 2.7 |
Rosaceae | 3 | 126,219 | 254 | 12.46% | 38.72% | 3.11 |
ND_Fabids1 | 5 | 177,210 | 254 | 17.5% | 38.72% | 2.21 |
Galegoids | 2 | 80,491 | 19 | 7.95% | 2.9% | 0.36 |
Papilionoideae | 3 | 134,748 | 110 | 13.31% | 16.77% | 1.26 |
ND_Fabids2 | 8 | 311,958 | 364 | 30.8% | 55.49% | 1.8 |
Euphorbiaceae | 2 | 61,969 | 4 | 6.12% | 0.61% | 0.1 |
Malpighiales | 3 | 103,403 | 36 | 10.21% | 5.49% | 0.54 |
Fabids | 11 | 415,361 | 400 | 41.02% | 60.98% | 1.49 |
Rosids1 | 21 | 725,650 | 565 | 71.66% | 86.13% | 1.2 |
Rosids | 22 | 752,154 | 570 | 74.27% | 86.89% | 1.17 |
Solanum | 2 | 69,898 | 51 | 6.9% | 7.77% | 1.13 |
ND_Dicots | 24 | 822,052 | 621 | 81.17% | 94.66% | 1.17 |
Dicots | 25 | 847,677 | 637 | 83.71% | 97.1% | 1.16 |
Monocots | 2 | 80,061 | 17 | 7.91% | 2.59% | 0.33 |
Angiosperms | 27 | 927,738 | 654 | 91.61% | 99.7% | 1.09 |
Magnoliophyta | 28 | 954,669 | 656 | 94.27% | 100% | 1.06 |
Embryophyta | 29 | 987,069 | 656 | 97.47% | 100% | 1.03 |
Chlorophyta | 2 | 25,624 | 0 | 2.53% | 0% | 0 |
Viridiplantae | 31 | 1,012,693 | 656 | 100% | 100% | 1 |