Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000081
- Gene count gene family
- 1112
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 20 | 2.71% | 1.8% | 0.66 |
Arabidopsis lyrata | 32,670 | 19 | 3.23% | 1.71% | 0.53 |
Capsella rubella | 26,521 | 20 | 2.62% | 1.8% | 0.69 |
Brassica rapa | 40,977 | 39 | 4.05% | 3.51% | 0.87 |
Thellungiella parvula | 25,691 | 19 | 2.54% | 1.71% | 0.67 |
Carica papaya | 28,027 | 28 | 2.77% | 2.52% | 0.91 |
Gossypium raimondii | 37,587 | 39 | 3.71% | 3.51% | 0.95 |
Theobroma cacao | 29,484 | 33 | 2.91% | 2.97% | 1.02 |
Citrus sinensis | 25,467 | 49 | 2.51% | 4.41% | 1.76 |
Eucalyptus grandis | 36,449 | 55 | 3.6% | 4.95% | 1.38 |
Cucumis melo | 27,514 | 22 | 2.72% | 1.98% | 0.73 |
Citrullus lanatus | 23,477 | 25 | 2.32% | 2.25% | 0.97 |
Prunus persica | 27,864 | 41 | 2.75% | 3.69% | 1.34 |
Malus domestica | 63,546 | 84 | 6.27% | 7.55% | 1.2 |
Fragaria vesca | 34,809 | 37 | 3.44% | 3.33% | 0.97 |
Lotus japonicus | 29,598 | 19 | 2.92% | 1.71% | 0.59 |
Medicago truncatula | 50,893 | 47 | 5.03% | 4.23% | 0.84 |
Glycine max | 54,257 | 63 | 5.36% | 5.67% | 1.06 |
Ricinus communis | 31,221 | 36 | 3.08% | 3.24% | 1.05 |
Manihot esculenta | 30,748 | 41 | 3.04% | 3.69% | 1.21 |
Populus trichocarpa | 41,434 | 63 | 4.09% | 5.67% | 1.39 |
Vitis vinifera | 26,504 | 38 | 2.62% | 3.42% | 1.31 |
Solanum lycopersicum | 34,813 | 39 | 3.44% | 3.51% | 1.02 |
Solanum tuberosum | 35,085 | 48 | 3.46% | 4.32% | 1.25 |
Beta vulgaris | 25,625 | 31 | 2.53% | 2.79% | 1.1 |
Zea mays | 39,323 | 61 | 3.88% | 5.49% | 1.41 |
Oryza sativa ssp. japonica | 40,738 | 71 | 4.02% | 6.38% | 1.59 |
Amborella trichopoda | 26,931 | 16 | 2.66% | 1.44% | 0.54 |
Physcomitrella patens | 32,400 | 9 | 3.2% | 0.81% | 0.25 |
Ostreococcus lucimarinus | 7,805 | 0 | 0.77% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 0 | 1.76% | 0% | 0 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 39 | 5.93% | 3.51% | 0.59 |
Camelineae | 3 | 86,607 | 59 | 8.55% | 5.31% | 0.62 |
ND_Brassicaceae1 | 2 | 66,668 | 58 | 6.58% | 5.22% | 0.79 |
Brassicaceae | 5 | 153,275 | 117 | 15.14% | 10.52% | 0.69 |
Brassicales | 6 | 181,302 | 145 | 17.9% | 13.04% | 0.73 |
Malvales | 2 | 67,071 | 72 | 6.62% | 6.47% | 0.98 |
ND_Malvids1 | 8 | 248,373 | 217 | 24.53% | 19.51% | 0.8 |
ND_Malvids2 | 9 | 273,840 | 266 | 27.04% | 23.92% | 0.88 |
Malvids | 10 | 310,289 | 321 | 30.64% | 28.87% | 0.94 |
Benincaseae | 2 | 50,991 | 47 | 5.04% | 4.23% | 0.84 |
Maloideae | 2 | 91,410 | 125 | 9.03% | 11.24% | 1.24 |
Rosaceae | 3 | 126,219 | 162 | 12.46% | 14.57% | 1.17 |
ND_Fabids1 | 5 | 177,210 | 209 | 17.5% | 18.79% | 1.07 |
Galegoids | 2 | 80,491 | 66 | 7.95% | 5.94% | 0.75 |
Papilionoideae | 3 | 134,748 | 129 | 13.31% | 11.6% | 0.87 |
ND_Fabids2 | 8 | 311,958 | 338 | 30.8% | 30.4% | 0.99 |
Euphorbiaceae | 2 | 61,969 | 77 | 6.12% | 6.92% | 1.13 |
Malpighiales | 3 | 103,403 | 140 | 10.21% | 12.59% | 1.23 |
Fabids | 11 | 415,361 | 478 | 41.02% | 42.99% | 1.05 |
Rosids1 | 21 | 725,650 | 799 | 71.66% | 71.85% | 1 |
Rosids | 22 | 752,154 | 837 | 74.27% | 75.27% | 1.01 |
Solanum | 2 | 69,898 | 87 | 6.9% | 7.82% | 1.13 |
ND_Dicots | 24 | 822,052 | 924 | 81.17% | 83.09% | 1.02 |
Dicots | 25 | 847,677 | 955 | 83.71% | 85.88% | 1.03 |
Monocots | 2 | 80,061 | 132 | 7.91% | 11.87% | 1.5 |
Angiosperms | 27 | 927,738 | 1,087 | 91.61% | 97.75% | 1.07 |
Magnoliophyta | 28 | 954,669 | 1,103 | 94.27% | 99.19% | 1.05 |
Embryophyta | 29 | 987,069 | 1,112 | 97.47% | 100% | 1.03 |
Chlorophyta | 2 | 25,624 | 0 | 2.53% | 0% | 0 |
Viridiplantae | 31 | 1,012,693 | 1,112 | 100% | 100% | 1 |