Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000073
- Gene count gene family
- 1206
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 35 | 2.71% | 2.9% | 1.07 |
Arabidopsis lyrata | 32,670 | 34 | 3.23% | 2.82% | 0.87 |
Capsella rubella | 26,521 | 38 | 2.62% | 3.15% | 1.2 |
Brassica rapa | 40,977 | 59 | 4.05% | 4.89% | 1.21 |
Thellungiella parvula | 25,691 | 33 | 2.54% | 2.74% | 1.08 |
Carica papaya | 28,027 | 27 | 2.77% | 2.24% | 0.81 |
Gossypium raimondii | 37,587 | 50 | 3.71% | 4.15% | 1.12 |
Theobroma cacao | 29,484 | 29 | 2.91% | 2.4% | 0.82 |
Citrus sinensis | 25,467 | 33 | 2.51% | 2.74% | 1.09 |
Eucalyptus grandis | 36,449 | 43 | 3.6% | 3.57% | 0.99 |
Cucumis melo | 27,514 | 39 | 2.72% | 3.23% | 1.19 |
Citrullus lanatus | 23,477 | 33 | 2.32% | 2.74% | 1.18 |
Prunus persica | 27,864 | 28 | 2.75% | 2.32% | 0.84 |
Malus domestica | 63,546 | 76 | 6.27% | 6.3% | 1 |
Fragaria vesca | 34,809 | 32 | 3.44% | 2.65% | 0.77 |
Lotus japonicus | 29,598 | 15 | 2.92% | 1.24% | 0.42 |
Medicago truncatula | 50,893 | 45 | 5.03% | 3.73% | 0.74 |
Glycine max | 54,257 | 82 | 5.36% | 6.8% | 1.27 |
Ricinus communis | 31,221 | 26 | 3.08% | 2.16% | 0.7 |
Manihot esculenta | 30,748 | 42 | 3.04% | 3.48% | 1.14 |
Populus trichocarpa | 41,434 | 39 | 4.09% | 3.23% | 0.79 |
Vitis vinifera | 26,504 | 31 | 2.62% | 2.57% | 0.98 |
Solanum lycopersicum | 34,813 | 40 | 3.44% | 3.32% | 0.97 |
Solanum tuberosum | 35,085 | 44 | 3.46% | 3.65% | 1.05 |
Beta vulgaris | 25,625 | 32 | 2.53% | 2.65% | 1.05 |
Zea mays | 39,323 | 94 | 3.88% | 7.79% | 2.01 |
Oryza sativa ssp. japonica | 40,738 | 58 | 4.02% | 4.81% | 1.2 |
Amborella trichopoda | 26,931 | 19 | 2.66% | 1.58% | 0.59 |
Physcomitrella patens | 32,400 | 45 | 3.2% | 3.73% | 1.17 |
Ostreococcus lucimarinus | 7,805 | 0 | 0.77% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 5 | 1.76% | 0.41% | 0.23 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 69 | 5.93% | 5.72% | 0.96 |
Camelineae | 3 | 86,607 | 107 | 8.55% | 8.87% | 1.04 |
ND_Brassicaceae1 | 2 | 66,668 | 92 | 6.58% | 7.63% | 1.16 |
Brassicaceae | 5 | 153,275 | 199 | 15.14% | 16.5% | 1.09 |
Brassicales | 6 | 181,302 | 226 | 17.9% | 18.74% | 1.05 |
Malvales | 2 | 67,071 | 79 | 6.62% | 6.55% | 0.99 |
ND_Malvids1 | 8 | 248,373 | 305 | 24.53% | 25.29% | 1.03 |
ND_Malvids2 | 9 | 273,840 | 338 | 27.04% | 28.03% | 1.04 |
Malvids | 10 | 310,289 | 381 | 30.64% | 31.59% | 1.03 |
Benincaseae | 2 | 50,991 | 72 | 5.04% | 5.97% | 1.18 |
Maloideae | 2 | 91,410 | 104 | 9.03% | 8.62% | 0.95 |
Rosaceae | 3 | 126,219 | 136 | 12.46% | 11.28% | 0.91 |
ND_Fabids1 | 5 | 177,210 | 208 | 17.5% | 17.25% | 0.99 |
Galegoids | 2 | 80,491 | 60 | 7.95% | 4.98% | 0.63 |
Papilionoideae | 3 | 134,748 | 142 | 13.31% | 11.77% | 0.88 |
ND_Fabids2 | 8 | 311,958 | 350 | 30.8% | 29.02% | 0.94 |
Euphorbiaceae | 2 | 61,969 | 68 | 6.12% | 5.64% | 0.92 |
Malpighiales | 3 | 103,403 | 107 | 10.21% | 8.87% | 0.87 |
Fabids | 11 | 415,361 | 457 | 41.02% | 37.89% | 0.92 |
Rosids1 | 21 | 725,650 | 838 | 71.66% | 69.49% | 0.97 |
Rosids | 22 | 752,154 | 869 | 74.27% | 72.06% | 0.97 |
Solanum | 2 | 69,898 | 84 | 6.9% | 6.97% | 1.01 |
ND_Dicots | 24 | 822,052 | 953 | 81.17% | 79.02% | 0.97 |
Dicots | 25 | 847,677 | 985 | 83.71% | 81.67% | 0.98 |
Monocots | 2 | 80,061 | 152 | 7.91% | 12.6% | 1.59 |
Angiosperms | 27 | 927,738 | 1,137 | 91.61% | 94.28% | 1.03 |
Magnoliophyta | 28 | 954,669 | 1,156 | 94.27% | 95.85% | 1.02 |
Embryophyta | 29 | 987,069 | 1,201 | 97.47% | 99.59% | 1.02 |
Chlorophyta | 2 | 25,624 | 5 | 2.53% | 0.41% | 0.16 |
Viridiplantae | 31 | 1,012,693 | 1,206 | 100% | 100% | 1 |