Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000044
- Gene count gene family
- 1608
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 4 | 2.71% | 0.25% | 0.09 |
Arabidopsis lyrata | 32,670 | 0 | 3.23% | 0% | 0 |
Capsella rubella | 26,521 | 11 | 2.62% | 0.68% | 0.26 |
Brassica rapa | 40,977 | 6 | 4.05% | 0.37% | 0.09 |
Thellungiella parvula | 25,691 | 35 | 2.54% | 2.18% | 0.86 |
Carica papaya | 28,027 | 15 | 2.77% | 0.93% | 0.34 |
Gossypium raimondii | 37,587 | 7 | 3.71% | 0.44% | 0.12 |
Theobroma cacao | 29,484 | 479 | 2.91% | 29.79% | 10.24 |
Citrus sinensis | 25,467 | 10 | 2.51% | 0.62% | 0.25 |
Eucalyptus grandis | 36,449 | 0 | 3.6% | 0% | 0 |
Cucumis melo | 27,514 | 173 | 2.72% | 10.76% | 3.96 |
Citrullus lanatus | 23,477 | 29 | 2.32% | 1.8% | 0.78 |
Prunus persica | 27,864 | 105 | 2.75% | 6.53% | 2.37 |
Malus domestica | 63,546 | 41 | 6.27% | 2.55% | 0.41 |
Fragaria vesca | 34,809 | 99 | 3.44% | 6.16% | 1.79 |
Lotus japonicus | 29,598 | 191 | 2.92% | 11.88% | 4.07 |
Medicago truncatula | 50,893 | 85 | 5.03% | 5.29% | 1.05 |
Glycine max | 54,257 | 14 | 5.36% | 0.87% | 0.16 |
Ricinus communis | 31,221 | 26 | 3.08% | 1.62% | 0.53 |
Manihot esculenta | 30,748 | 13 | 3.04% | 0.81% | 0.27 |
Populus trichocarpa | 41,434 | 11 | 4.09% | 0.68% | 0.17 |
Vitis vinifera | 26,504 | 3 | 2.62% | 0.19% | 0.07 |
Solanum lycopersicum | 34,813 | 104 | 3.44% | 6.47% | 1.88 |
Solanum tuberosum | 35,085 | 71 | 3.46% | 4.42% | 1.28 |
Beta vulgaris | 25,625 | 22 | 2.53% | 1.37% | 0.54 |
Zea mays | 39,323 | 2 | 3.88% | 0.12% | 0.03 |
Oryza sativa ssp. japonica | 40,738 | 33 | 4.02% | 2.05% | 0.51 |
Amborella trichopoda | 26,931 | 7 | 2.66% | 0.44% | 0.17 |
Physcomitrella patens | 32,400 | 5 | 3.2% | 0.31% | 0.1 |
Ostreococcus lucimarinus | 7,805 | 0 | 0.77% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 7 | 1.76% | 0.44% | 0.25 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 4 | 5.93% | 0.25% | 0.04 |
Camelineae | 3 | 86,607 | 15 | 8.55% | 0.93% | 0.11 |
ND_Brassicaceae1 | 2 | 66,668 | 41 | 6.58% | 2.55% | 0.39 |
Brassicaceae | 5 | 153,275 | 56 | 15.14% | 3.48% | 0.23 |
Brassicales | 6 | 181,302 | 71 | 17.9% | 4.42% | 0.25 |
Malvales | 2 | 67,071 | 486 | 6.62% | 30.22% | 4.56 |
ND_Malvids1 | 8 | 248,373 | 557 | 24.53% | 34.64% | 1.41 |
ND_Malvids2 | 9 | 273,840 | 567 | 27.04% | 35.26% | 1.3 |
Malvids | 10 | 310,289 | 567 | 30.64% | 35.26% | 1.15 |
Benincaseae | 2 | 50,991 | 202 | 5.04% | 12.56% | 2.49 |
Maloideae | 2 | 91,410 | 146 | 9.03% | 9.08% | 1.01 |
Rosaceae | 3 | 126,219 | 245 | 12.46% | 15.24% | 1.22 |
ND_Fabids1 | 5 | 177,210 | 447 | 17.5% | 27.8% | 1.59 |
Galegoids | 2 | 80,491 | 276 | 7.95% | 17.16% | 2.16 |
Papilionoideae | 3 | 134,748 | 290 | 13.31% | 18.03% | 1.35 |
ND_Fabids2 | 8 | 311,958 | 737 | 30.8% | 45.83% | 1.49 |
Euphorbiaceae | 2 | 61,969 | 39 | 6.12% | 2.43% | 0.4 |
Malpighiales | 3 | 103,403 | 50 | 10.21% | 3.11% | 0.3 |
Fabids | 11 | 415,361 | 787 | 41.02% | 48.94% | 1.19 |
Rosids1 | 21 | 725,650 | 1,354 | 71.66% | 84.2% | 1.17 |
Rosids | 22 | 752,154 | 1,357 | 74.27% | 84.39% | 1.14 |
Solanum | 2 | 69,898 | 175 | 6.9% | 10.88% | 1.58 |
ND_Dicots | 24 | 822,052 | 1,532 | 81.17% | 95.27% | 1.17 |
Dicots | 25 | 847,677 | 1,554 | 83.71% | 96.64% | 1.15 |
Monocots | 2 | 80,061 | 35 | 7.91% | 2.18% | 0.28 |
Angiosperms | 27 | 927,738 | 1,589 | 91.61% | 98.82% | 1.08 |
Magnoliophyta | 28 | 954,669 | 1,596 | 94.27% | 99.25% | 1.05 |
Embryophyta | 29 | 987,069 | 1,601 | 97.47% | 99.56% | 1.02 |
Chlorophyta | 2 | 25,624 | 7 | 2.53% | 0.44% | 0.17 |
Viridiplantae | 31 | 1,012,693 | 1,608 | 100% | 100% | 1 |