Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000032
- Gene count gene family
- 1860
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 35 | 2.71% | 1.88% | 0.69 |
Arabidopsis lyrata | 32,670 | 33 | 3.23% | 1.77% | 0.55 |
Capsella rubella | 26,521 | 43 | 2.62% | 2.31% | 0.88 |
Brassica rapa | 40,977 | 53 | 4.05% | 2.85% | 0.7 |
Thellungiella parvula | 25,691 | 30 | 2.54% | 1.61% | 0.63 |
Carica papaya | 28,027 | 26 | 2.77% | 1.4% | 0.51 |
Gossypium raimondii | 37,587 | 59 | 3.71% | 3.17% | 0.85 |
Theobroma cacao | 29,484 | 62 | 2.91% | 3.33% | 1.14 |
Citrus sinensis | 25,467 | 63 | 2.51% | 3.39% | 1.35 |
Eucalyptus grandis | 36,449 | 112 | 3.6% | 6.02% | 1.67 |
Cucumis melo | 27,514 | 40 | 2.72% | 2.15% | 0.79 |
Citrullus lanatus | 23,477 | 45 | 2.32% | 2.42% | 1.04 |
Prunus persica | 27,864 | 64 | 2.75% | 3.44% | 1.25 |
Malus domestica | 63,546 | 105 | 6.27% | 5.65% | 0.9 |
Fragaria vesca | 34,809 | 63 | 3.44% | 3.39% | 0.99 |
Lotus japonicus | 29,598 | 31 | 2.92% | 1.67% | 0.57 |
Medicago truncatula | 50,893 | 124 | 5.03% | 6.67% | 1.33 |
Glycine max | 54,257 | 98 | 5.36% | 5.27% | 0.98 |
Ricinus communis | 31,221 | 57 | 3.08% | 3.06% | 0.99 |
Manihot esculenta | 30,748 | 52 | 3.04% | 2.8% | 0.92 |
Populus trichocarpa | 41,434 | 75 | 4.09% | 4.03% | 0.99 |
Vitis vinifera | 26,504 | 31 | 2.62% | 1.67% | 0.64 |
Solanum lycopersicum | 34,813 | 101 | 3.44% | 5.43% | 1.58 |
Solanum tuberosum | 35,085 | 189 | 3.46% | 10.16% | 2.94 |
Beta vulgaris | 25,625 | 51 | 2.53% | 2.74% | 1.08 |
Zea mays | 39,323 | 64 | 3.88% | 3.44% | 0.89 |
Oryza sativa ssp. japonica | 40,738 | 90 | 4.02% | 4.84% | 1.2 |
Amborella trichopoda | 26,931 | 57 | 2.66% | 3.06% | 1.15 |
Physcomitrella patens | 32,400 | 7 | 3.2% | 0.38% | 0.12 |
Ostreococcus lucimarinus | 7,805 | 0 | 0.77% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 0 | 1.76% | 0% | 0 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 68 | 5.93% | 3.66% | 0.62 |
Camelineae | 3 | 86,607 | 111 | 8.55% | 5.97% | 0.7 |
ND_Brassicaceae1 | 2 | 66,668 | 83 | 6.58% | 4.46% | 0.68 |
Brassicaceae | 5 | 153,275 | 194 | 15.14% | 10.43% | 0.69 |
Brassicales | 6 | 181,302 | 220 | 17.9% | 11.83% | 0.66 |
Malvales | 2 | 67,071 | 121 | 6.62% | 6.51% | 0.98 |
ND_Malvids1 | 8 | 248,373 | 341 | 24.53% | 18.33% | 0.75 |
ND_Malvids2 | 9 | 273,840 | 404 | 27.04% | 21.72% | 0.8 |
Malvids | 10 | 310,289 | 516 | 30.64% | 27.74% | 0.91 |
Benincaseae | 2 | 50,991 | 85 | 5.04% | 4.57% | 0.91 |
Maloideae | 2 | 91,410 | 169 | 9.03% | 9.09% | 1.01 |
Rosaceae | 3 | 126,219 | 232 | 12.46% | 12.47% | 1 |
ND_Fabids1 | 5 | 177,210 | 317 | 17.5% | 17.04% | 0.97 |
Galegoids | 2 | 80,491 | 155 | 7.95% | 8.33% | 1.05 |
Papilionoideae | 3 | 134,748 | 253 | 13.31% | 13.6% | 1.02 |
ND_Fabids2 | 8 | 311,958 | 570 | 30.8% | 30.65% | 1 |
Euphorbiaceae | 2 | 61,969 | 109 | 6.12% | 5.86% | 0.96 |
Malpighiales | 3 | 103,403 | 184 | 10.21% | 9.89% | 0.97 |
Fabids | 11 | 415,361 | 754 | 41.02% | 40.54% | 0.99 |
Rosids1 | 21 | 725,650 | 1,270 | 71.66% | 68.28% | 0.95 |
Rosids | 22 | 752,154 | 1,301 | 74.27% | 69.95% | 0.94 |
Solanum | 2 | 69,898 | 290 | 6.9% | 15.59% | 2.26 |
ND_Dicots | 24 | 822,052 | 1,591 | 81.17% | 85.54% | 1.05 |
Dicots | 25 | 847,677 | 1,642 | 83.71% | 88.28% | 1.05 |
Monocots | 2 | 80,061 | 154 | 7.91% | 8.28% | 1.05 |
Angiosperms | 27 | 927,738 | 1,796 | 91.61% | 96.56% | 1.05 |
Magnoliophyta | 28 | 954,669 | 1,853 | 94.27% | 99.62% | 1.06 |
Embryophyta | 29 | 987,069 | 1,860 | 97.47% | 100% | 1.03 |
Chlorophyta | 2 | 25,624 | 0 | 2.53% | 0% | 0 |
Viridiplantae | 31 | 1,012,693 | 1,860 | 100% | 100% | 1 |