Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000023
- Gene count gene family
- 2177
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 55 | 2.71% | 2.53% | 0.93 |
Arabidopsis lyrata | 32,670 | 76 | 3.23% | 3.49% | 1.08 |
Capsella rubella | 26,521 | 52 | 2.62% | 2.39% | 0.91 |
Brassica rapa | 40,977 | 68 | 4.05% | 3.12% | 0.77 |
Thellungiella parvula | 25,691 | 52 | 2.54% | 2.39% | 0.94 |
Carica papaya | 28,027 | 63 | 2.77% | 2.89% | 1.04 |
Gossypium raimondii | 37,587 | 68 | 3.71% | 3.12% | 0.84 |
Theobroma cacao | 29,484 | 61 | 2.91% | 2.8% | 0.96 |
Citrus sinensis | 25,467 | 69 | 2.51% | 3.17% | 1.26 |
Eucalyptus grandis | 36,449 | 73 | 3.6% | 3.35% | 0.93 |
Cucumis melo | 27,514 | 53 | 2.72% | 2.43% | 0.89 |
Citrullus lanatus | 23,477 | 45 | 2.32% | 2.07% | 0.89 |
Prunus persica | 27,864 | 65 | 2.75% | 2.99% | 1.09 |
Malus domestica | 63,546 | 188 | 6.27% | 8.64% | 1.38 |
Fragaria vesca | 34,809 | 59 | 3.44% | 2.71% | 0.79 |
Lotus japonicus | 29,598 | 35 | 2.92% | 1.61% | 0.55 |
Medicago truncatula | 50,893 | 135 | 5.03% | 6.2% | 1.23 |
Glycine max | 54,257 | 127 | 5.36% | 5.83% | 1.09 |
Ricinus communis | 31,221 | 77 | 3.08% | 3.54% | 1.15 |
Manihot esculenta | 30,748 | 71 | 3.04% | 3.26% | 1.07 |
Populus trichocarpa | 41,434 | 88 | 4.09% | 4.04% | 0.99 |
Vitis vinifera | 26,504 | 88 | 2.62% | 4.04% | 1.54 |
Solanum lycopersicum | 34,813 | 97 | 3.44% | 4.46% | 1.3 |
Solanum tuberosum | 35,085 | 126 | 3.46% | 5.79% | 1.67 |
Beta vulgaris | 25,625 | 42 | 2.53% | 1.93% | 0.76 |
Zea mays | 39,323 | 55 | 3.88% | 2.53% | 0.65 |
Oryza sativa ssp. japonica | 40,738 | 64 | 4.02% | 2.94% | 0.73 |
Amborella trichopoda | 26,931 | 104 | 2.66% | 4.78% | 1.8 |
Physcomitrella patens | 32,400 | 21 | 3.2% | 0.96% | 0.3 |
Ostreococcus lucimarinus | 7,805 | 0 | 0.77% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 0 | 1.76% | 0% | 0 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 131 | 5.93% | 6.02% | 1.02 |
Camelineae | 3 | 86,607 | 183 | 8.55% | 8.41% | 0.98 |
ND_Brassicaceae1 | 2 | 66,668 | 120 | 6.58% | 5.51% | 0.84 |
Brassicaceae | 5 | 153,275 | 303 | 15.14% | 13.92% | 0.92 |
Brassicales | 6 | 181,302 | 366 | 17.9% | 16.81% | 0.94 |
Malvales | 2 | 67,071 | 129 | 6.62% | 5.93% | 0.9 |
ND_Malvids1 | 8 | 248,373 | 495 | 24.53% | 22.74% | 0.93 |
ND_Malvids2 | 9 | 273,840 | 564 | 27.04% | 25.91% | 0.96 |
Malvids | 10 | 310,289 | 637 | 30.64% | 29.26% | 0.95 |
Benincaseae | 2 | 50,991 | 98 | 5.04% | 4.5% | 0.89 |
Maloideae | 2 | 91,410 | 253 | 9.03% | 11.62% | 1.29 |
Rosaceae | 3 | 126,219 | 312 | 12.46% | 14.33% | 1.15 |
ND_Fabids1 | 5 | 177,210 | 410 | 17.5% | 18.83% | 1.08 |
Galegoids | 2 | 80,491 | 170 | 7.95% | 7.81% | 0.98 |
Papilionoideae | 3 | 134,748 | 297 | 13.31% | 13.64% | 1.02 |
ND_Fabids2 | 8 | 311,958 | 707 | 30.8% | 32.48% | 1.05 |
Euphorbiaceae | 2 | 61,969 | 148 | 6.12% | 6.8% | 1.11 |
Malpighiales | 3 | 103,403 | 236 | 10.21% | 10.84% | 1.06 |
Fabids | 11 | 415,361 | 943 | 41.02% | 43.32% | 1.06 |
Rosids1 | 21 | 725,650 | 1,580 | 71.66% | 72.58% | 1.01 |
Rosids | 22 | 752,154 | 1,668 | 74.27% | 76.62% | 1.03 |
Solanum | 2 | 69,898 | 223 | 6.9% | 10.24% | 1.48 |
ND_Dicots | 24 | 822,052 | 1,891 | 81.17% | 86.86% | 1.07 |
Dicots | 25 | 847,677 | 1,933 | 83.71% | 88.79% | 1.06 |
Monocots | 2 | 80,061 | 119 | 7.91% | 5.47% | 0.69 |
Angiosperms | 27 | 927,738 | 2,052 | 91.61% | 94.26% | 1.03 |
Magnoliophyta | 28 | 954,669 | 2,156 | 94.27% | 99.04% | 1.05 |
Embryophyta | 29 | 987,069 | 2,177 | 97.47% | 100% | 1.03 |
Chlorophyta | 2 | 25,624 | 0 | 2.53% | 0% | 0 |
Viridiplantae | 31 | 1,012,693 | 2,177 | 100% | 100% | 1 |