Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000005
- Gene count gene family
- 4790
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 144 | 2.71% | 3.01% | 1.11 |
Arabidopsis lyrata | 32,670 | 161 | 3.23% | 3.36% | 1.04 |
Capsella rubella | 26,521 | 135 | 2.62% | 2.82% | 1.08 |
Brassica rapa | 40,977 | 172 | 4.05% | 3.59% | 0.89 |
Thellungiella parvula | 25,691 | 84 | 2.54% | 1.75% | 0.69 |
Carica papaya | 28,027 | 16 | 2.77% | 0.33% | 0.12 |
Gossypium raimondii | 37,587 | 51 | 3.71% | 1.06% | 0.29 |
Theobroma cacao | 29,484 | 31 | 2.91% | 0.65% | 0.22 |
Citrus sinensis | 25,467 | 227 | 2.51% | 4.74% | 1.89 |
Eucalyptus grandis | 36,449 | 705 | 3.6% | 14.72% | 4.09 |
Cucumis melo | 27,514 | 48 | 2.72% | 1% | 0.37 |
Citrullus lanatus | 23,477 | 24 | 2.32% | 0.5% | 0.22 |
Prunus persica | 27,864 | 209 | 2.75% | 4.36% | 1.59 |
Malus domestica | 63,546 | 767 | 6.27% | 16.01% | 2.55 |
Fragaria vesca | 34,809 | 189 | 3.44% | 3.95% | 1.15 |
Lotus japonicus | 29,598 | 54 | 2.92% | 1.13% | 0.39 |
Medicago truncatula | 50,893 | 550 | 5.03% | 11.48% | 2.28 |
Glycine max | 54,257 | 263 | 5.36% | 5.49% | 1.02 |
Ricinus communis | 31,221 | 71 | 3.08% | 1.48% | 0.48 |
Manihot esculenta | 30,748 | 63 | 3.04% | 1.32% | 0.43 |
Populus trichocarpa | 41,434 | 287 | 4.09% | 5.99% | 1.46 |
Vitis vinifera | 26,504 | 111 | 2.62% | 2.32% | 0.89 |
Solanum lycopersicum | 34,813 | 57 | 3.44% | 1.19% | 0.35 |
Solanum tuberosum | 35,085 | 156 | 3.46% | 3.26% | 0.94 |
Beta vulgaris | 25,625 | 4 | 2.53% | 0.08% | 0.03 |
Zea mays | 39,323 | 3 | 3.88% | 0.06% | 0.02 |
Oryza sativa ssp. japonica | 40,738 | 2 | 4.02% | 0.04% | 0.01 |
Amborella trichopoda | 26,931 | 38 | 2.66% | 0.79% | 0.3 |
Physcomitrella patens | 32,400 | 167 | 3.2% | 3.49% | 1.09 |
Ostreococcus lucimarinus | 7,805 | 0 | 0.77% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 1 | 1.76% | 0.02% | 0.01 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 305 | 5.93% | 6.37% | 1.07 |
Camelineae | 3 | 86,607 | 440 | 8.55% | 9.19% | 1.07 |
ND_Brassicaceae1 | 2 | 66,668 | 256 | 6.58% | 5.34% | 0.81 |
Brassicaceae | 5 | 153,275 | 696 | 15.14% | 14.53% | 0.96 |
Brassicales | 6 | 181,302 | 712 | 17.9% | 14.86% | 0.83 |
Malvales | 2 | 67,071 | 82 | 6.62% | 1.71% | 0.26 |
ND_Malvids1 | 8 | 248,373 | 794 | 24.53% | 16.58% | 0.68 |
ND_Malvids2 | 9 | 273,840 | 1,021 | 27.04% | 21.32% | 0.79 |
Malvids | 10 | 310,289 | 1,726 | 30.64% | 36.03% | 1.18 |
Benincaseae | 2 | 50,991 | 72 | 5.04% | 1.5% | 0.3 |
Maloideae | 2 | 91,410 | 976 | 9.03% | 20.38% | 2.26 |
Rosaceae | 3 | 126,219 | 1,165 | 12.46% | 24.32% | 1.95 |
ND_Fabids1 | 5 | 177,210 | 1,237 | 17.5% | 25.82% | 1.48 |
Galegoids | 2 | 80,491 | 604 | 7.95% | 12.61% | 1.59 |
Papilionoideae | 3 | 134,748 | 867 | 13.31% | 18.1% | 1.36 |
ND_Fabids2 | 8 | 311,958 | 2,104 | 30.8% | 43.92% | 1.43 |
Euphorbiaceae | 2 | 61,969 | 134 | 6.12% | 2.8% | 0.46 |
Malpighiales | 3 | 103,403 | 421 | 10.21% | 8.79% | 0.86 |
Fabids | 11 | 415,361 | 2,525 | 41.02% | 52.71% | 1.28 |
Rosids1 | 21 | 725,650 | 4,251 | 71.66% | 88.75% | 1.24 |
Rosids | 22 | 752,154 | 4,362 | 74.27% | 91.06% | 1.23 |
Solanum | 2 | 69,898 | 213 | 6.9% | 4.45% | 0.64 |
ND_Dicots | 24 | 822,052 | 4,575 | 81.17% | 95.51% | 1.18 |
Dicots | 25 | 847,677 | 4,579 | 83.71% | 95.59% | 1.14 |
Monocots | 2 | 80,061 | 5 | 7.91% | 0.1% | 0.01 |
Angiosperms | 27 | 927,738 | 4,584 | 91.61% | 95.7% | 1.04 |
Magnoliophyta | 28 | 954,669 | 4,622 | 94.27% | 96.49% | 1.02 |
Embryophyta | 29 | 987,069 | 4,789 | 97.47% | 99.98% | 1.03 |
Chlorophyta | 2 | 25,624 | 1 | 2.53% | 0.02% | 0.01 |
Viridiplantae | 31 | 1,012,693 | 4,790 | 100% | 100% | 1 |