Interactive Phylogenetics Module

Gene Id
Zm00001d039813

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001d039813 Zea mays B73 HOM04x5M001682 ORTHO04x5M001663 3.7e-53 209.9 106 100.0
Zm00008a011075 Zea mays PH207 HOM04x5M000032 ORTHO04x5M000037 3.6e-48 193.4 131 80.2
Zm00001d015810 Zea mays B73 HOM04x5M001682 ORTHO04x5M001663 7.0e-44 179.1 131 77.1
Zm00007a00039347 Zea mays B104 HOM04x5M001682 ORTHO04x5M001663 7.0e-44 179.1 131 77.1
Zm00008a021310 Zea mays PH207 HOM04x5M001682 ORTHO04x5M001663 7.8e-43 175.6 133 75.2
Sspon.04G0015730-3D Saccharum spontaneum HOM04x5M001682 ORTHO04x5M001663 8.1e-40 165.6 131 71.0
MisinT306300 Miscanthus sinensis HOM04x5M001682 ORTHO04x5M001663 8.9e-39 162.2 133 72.9
Sobic.004G080600 Sorghum bicolor HOM04x5M001682 ORTHO04x5M001663 8.3e-37 155.6 131 69.5
Misin07G080000 Miscanthus sinensis HOM04x5M001682 ORTHO04x5M001663 2.4e-36 154.1 131 69.5
Zm00001d018154 Zea mays B73 HOM04x5M022157 ORTHO04x5M030015 1.9e-28 127.9 64 98.4
Zm00007a00042721 Zea mays B104 HOM04x5M001682 ORTHO04x5M001663 1.9e-28 127.9 85 80.0
LOC_Os02g10440 Oryza sativa ssp. japonica HOM04x5M001682 ORTHO04x5M001663 3.9e-26 120.2 131 55.0
OsR498G0203157500.01 Oryza sativa ssp. indica HOM04x5M001682 ORTHO04x5M001663 3.9e-26 120.2 131 55.0
Pgl_GLEAN_10020438 Cenchrus americanus HOM04x5M001682 ORTHO04x5M001663 6.6e-26 119.4 117 59.0
OB02G16760 Oryza brachyantha HOM04x5M001682 ORTHO04x5M001663 8.7e-26 119.0 130 56.2
Zm00001d007637 Zea mays B73 HOM04x5M000032 ORTHO04x5M000037 8.7e-26 119.0 59 98.3
Sspon.04G0015730-2B Saccharum spontaneum HOM04x5M001682 ORTHO04x5M001663 5.3e-23 109.8 66 83.3
Zjn_sc00045.1.g01410.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M001682 ORTHO04x5M001663 5.3e-23 109.8 130 53.1
Bradi3g07220 Brachypodium distachyon HOM04x5M001682 ORTHO04x5M001663 3.4e-22 107.1 130 54.6
TraesCS6A02G160300 Triticum aestivum HOM04x5M001682 ORTHO04x5M001663 3.4e-22 107.1 126 54.8
TRITD6Av1G063420 Triticum turgidum HOM04x5M001682 ORTHO04x5M001663 3.4e-22 107.1 126 54.8
TraesCS6B02G191100 Triticum aestivum HOM04x5M001682 ORTHO04x5M001663 7.6e-22 105.9 126 54.0
TraesCS6D02G152400 Triticum aestivum HOM04x5M001682 ORTHO04x5M001663 7.6e-22 105.9 126 54.0
TRITD6Bv1G072850 Triticum turgidum HOM04x5M001682 ORTHO04x5M001663 2.2e-21 104.4 123 53.7
Zm00008a004147 Zea mays PH207 HOM04x5M000032 ORTHO04x5M000037 3.8e-21 103.6 52 98.1
Oropetium_20150105_18498 Oropetium thomaeum HOM04x5M001682 ORTHO04x5M001663 1.2e-19 98.6 131 51.1
OB06G28560 Oryza brachyantha HOM04x5M001682 ORTHO04x5M001663 3.9e-18 93.6 126 48.4
Seita.4G219600 Setaria italica HOM04x5M001682 ORTHO04x5M001663 5.1e-18 93.2 126 47.6
LOC_Os06g40730 Oryza sativa ssp. japonica HOM04x5M001682 ORTHO04x5M001663 6.6e-18 92.8 126 48.4
OsR498G0612920200.01 Oryza sativa ssp. indica HOM04x5M001682 ORTHO04x5M001663 6.6e-18 92.8 126 48.4
Pgl_GLEAN_10010790 Cenchrus americanus HOM04x5M001682 ORTHO04x5M001663 8.7e-18 92.4 126 47.6
Misin18G187900 Miscanthus sinensis HOM04x5M001682 ORTHO04x5M001663 1.5e-17 91.7 126 46.8
Sobic.010G189000 Sorghum bicolor HOM04x5M001682 ORTHO04x5M001663 1.5e-17 91.7 126 46.8
Oropetium_20150105_17468 Oropetium thomaeum HOM04x5M001682 ORTHO04x5M001663 1.6e-16 88.2 126 45.2
Bradi1g36220 Brachypodium distachyon HOM04x5M001682 ORTHO04x5M001663 2.1e-16 87.8 123 45.5
Zm00007a00007045 Zea mays B104 HOM04x5M003311 ORTHO04x5M004559 3.6e-16 87.0 51 82.4
TraesCS7B02G285000 Triticum aestivum HOM04x5M001682 ORTHO04x5M001663 4.8e-16 86.7 117 47.9
TRITD7Bv1G159820 Triticum turgidum HOM04x5M001682 ORTHO04x5M001663 4.8e-16 86.7 117 47.9
HORVU7Hr1G090900 Hordeum vulgare HOM04x5M001682 ORTHO04x5M001663 1.4e-15 85.1 117 47.0
TraesCS7A02G382200 Triticum aestivum HOM04x5M001682 ORTHO04x5M001663 1.4e-15 85.1 117 47.0
TRITD7Av1G205580 Triticum turgidum HOM04x5M001682 ORTHO04x5M001663 1.4e-15 85.1 117 47.0
LP024941 Lolium perenne HOM04x5M001682 ORTHO04x5M001663 5.3e-15 83.2 116 46.6
TraesCS7D02G378700 Triticum aestivum HOM04x5M001682 ORTHO04x5M001663 5.3e-15 83.2 117 46.2
Sspon.08G0006040-1A Saccharum spontaneum HOM04x5M001682 ORTHO04x5M001663 9.9e-14 79.0 103 51.5
Zm00001d032817 Zea mays B73 HOM04x5M001197 ORTHO04x5M016518 8.4e-13 75.9 65 64.6
Zm00001d017938 Zea mays B73 HOM04x5M001197 ORTHO04x5M016518 8.4e-13 75.9 65 64.6
Zm00007a00034584 Zea mays B104 HOM04x5M001197 ORTHO04x5M016518 8.4e-13 75.9 65 64.6
Zm00007a00050093 Zea mays B104 HOM04x5M001197 ORTHO04x5M016518 8.4e-13 75.9 65 64.6
Aco018487 Ananas comosus HOM04x5M001682 ORTHO04x5M001663 1.4e-12 75.1 129 41.1
Zm00001d031876 Zea mays B73 HOM04x5M001368 ORTHO04x5M016518 3.2e-12 73.9 65 63.1
Zm00007a00030753 Zea mays B104 HOM04x5M001368 ORTHO04x5M016518 3.2e-12 73.9 65 63.1
p5.00_sc00068_p0002 Elaeis guineensis HOM04x5M001682 ORTHO04x5M001663 1.2e-11 72.0 135 39.3
Misin19G181000 Miscanthus sinensis HOM04x5M001682 ORTHO04x5M001663 2.7e-11 70.9 126 40.5
Sspon.08G0019950-1B Saccharum spontaneum HOM04x5M001682 ORTHO04x5M001663 2.3e-10 67.8 123 41.5
CALSI_Maker00036733 Calamus simplicifolius HOM04x5M001682 ORTHO04x5M001663 1.9e-09 64.7 112 41.1
Spipo12G0023100 Spirodela polyrhiza HOM04x5M001682 ORTHO04x5M001663 3.7e-08 60.5 119 42.0
PH01005754G0020 Phyllostachys edulis HOM04x5M001682 ORTHO04x5M001663 1.1e-07 58.9 66 51.5
evm.TU.AsparagusV1_05.881.V1.1 Asparagus officinalis HOM04x5M001682 ORTHO04x5M001663 1.8e-07 58.2 128 37.5
Zm00001d036829 Zea mays B73 HOM04x5M001682 ORTHO04x5M001663 1.8e-07 58.2 126 36.5
GSVIVG01007067001 Vitis vinifera HOM04x5M001682 ORTHO04x5M001663 2.4e-07 57.8 123 41.5
PEQU_26156 Phalaenopsis equestris HOM04x5M001682 ORTHO04x5M001663 6.9e-07 56.2 89 42.7
ATR0751G113 Amborella trichopoda HOM04x5M001682 ORTHO04x5M001663 2.0e-06 54.7 128 38.3
Sspon.08G0006040-2C Saccharum spontaneum HOM04x5M001682 ORTHO04x5M001663 3.4e-06 53.9 54 59.3
Zm00007a00007365 Zea mays B104 HOM04x5M001682 ORTHO04x5M001663 9.9e-06 52.4 147 34.0
Zm00008a024746 Zea mays PH207 HOM04x5M001682 ORTHO04x5M001663 9.9e-06 52.4 147 34.0

Amborella trichopoda (1 genes)
Ananas comosus (1 genes)
Apostasia shenzhenica (0 genes)
Arabidopsis thaliana (0 genes)
Asparagus officinalis (1 genes)
Brachypodium distachyon (2 genes)
Calamus simplicifolius (1 genes)
Cenchrus americanus (2 genes)
Chlamydomonas reinhardtii (0 genes)
Elaeis guineensis (1 genes)
Hordeum vulgare (1 genes)
Lolium perenne (1 genes)
Marchantia polymorpha (0 genes)
Micromonas commoda (0 genes)
Miscanthus sinensis (4 genes)
Musa acuminata (0 genes)
Oropetium thomaeum (2 genes)
Oryza brachyantha (2 genes)
Oryza sativa ssp. indica (2 genes)
Oryza sativa ssp. japonica (2 genes)
Phalaenopsis equestris (1 genes)
Phyllostachys edulis (1 genes)
Physcomitrium patens (0 genes)
Picea abies (0 genes)
Populus trichocarpa (0 genes)
Saccharum spontaneum (5 genes)
Selaginella moellendorffii (0 genes)
Setaria italica (1 genes)
Solanum lycopersicum (0 genes)
Sorghum bicolor (2 genes)
Spirodela polyrhiza (1 genes)
Triticum aestivum (6 genes)
Triticum turgidum (4 genes)
Vitis vinifera (1 genes)
Zea mays B73 (8 genes)
Zea mays B104 (7 genes)
Zea mays PH207 (4 genes)
Zostera marina (0 genes)
Zoysia japonica ssp. nagirizaki (1 genes)

Program Settings