Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Sspon.01G0029910-2D	Saccharum spontaneum	HOM04x5M007573	ORTHO04x5M009717	5.4e-223	776.5	572	100.0
Sspon.01G0029910-1A	Saccharum spontaneum	HOM04x5M007573	ORTHO04x5M009717	2.2e-147	525.4	357	98.6
Zm00007a00047457	Zea mays B104	HOM04x5M007573	ORTHO04x5M009717	7.2e-127	457.2	358	79.9
Zm00008a019244	Zea mays PH207	HOM04x5M007573	ORTHO04x5M009717	7.2e-127	457.2	358	79.9
Zm00001d013100	Zea mays B73	HOM04x5M007573	ORTHO04x5M009717	2.1e-118	429.1	420	68.1
Zm00007a00016215	Zea mays B104	HOM04x5M007573	ORTHO04x5M009717	7.0e-114	414.1	340	88.2
Misin02G040400	Miscanthus sinensis	HOM04x5M007573	ORTHO04x5M009717	4.3e-111	404.8	336	83.0
Misin01G055600	Miscanthus sinensis	HOM04x5M007573	ORTHO04x5M009717	8.0e-110	400.6	325	82.8
Sobic.001G063100	Sorghum bicolor	HOM04x5M007573	ORTHO04x5M009717	8.9e-109	397.1	317	86.8
Zm00001d034380	Zea mays B73	HOM04x5M007573	ORTHO04x5M009717	2.3e-104	382.5	335	86.0
Seita.9G062200	Setaria italica	HOM04x5M007573	ORTHO04x5M009717	2.3e-93	345.9	325	69.2
Zm00008a005426	Zea mays PH207	HOM04x5M007573	ORTHO04x5M009717	1.9e-82	309.7	225	83.6
PH01000458G0270	Phyllostachys edulis	HOM04x5M007573	ORTHO04x5M009717	5.1e-80	301.6	315	64.8
TraesCS5B02G429000	Triticum aestivum	HOM04x5M007573	ORTHO04x5M009717	1.7e-75	286.6	286	69.9
TRITD5Bv1G212160	Triticum turgidum	HOM04x5M007573	ORTHO04x5M009717	1.4e-74	283.5	286	69.2
Pgl_GLEAN_10033819	Cenchrus americanus	HOM04x5M007573	ORTHO04x5M009717	3.2e-74	282.3	228	78.9
Zjn_sc00014.1.g06900.1.am.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M007573	ORTHO04x5M009717	1.1e-71	273.9	327	59.3
TraesCS5D02G435000	Triticum aestivum	HOM04x5M007573	ORTHO04x5M009717	7.1e-66	254.6	237	67.1
HORVU5Hr1G103790	Hordeum vulgare	HOM04x5M007573	ORTHO04x5M009717	3.5e-65	252.3	289	59.5
LOC_Os03g57530	Oryza sativa ssp. japonica	HOM04x5M007573	ORTHO04x5M009717	1.8e-64	250.0	328	59.1
OsR498G0307179400.01	Oryza sativa ssp. indica	HOM04x5M007573	ORTHO04x5M009717	1.8e-64	250.0	328	59.1
TraesCS5A02G427100	Triticum aestivum	HOM04x5M007573	ORTHO04x5M009717	1.8e-64	250.0	237	63.7
TRITD5Av1G215750	Triticum turgidum	HOM04x5M007573	ORTHO04x5M009717	5.1e-64	248.4	237	63.3
Bradi1g06250	Brachypodium distachyon	HOM04x5M007573	ORTHO04x5M009717	9.6e-63	244.2	285	66.3
LP029224	Lolium perenne	HOM04x5M007573	ORTHO04x5M009717	7.1e-58	228.0	319	59.2
Zjn_sc00013.1.g06640.1.sm.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M007573	ORTHO04x5M009717	2.4e-53	213.0	237	57.8
OB03G43760	Oryza brachyantha	HOM04x5M007573	ORTHO04x5M009717	4.1e-37	159.1	237	51.5
LP037141	Lolium perenne	HOM04x5M007573	ORTHO04x5M009717	5.3e-37	158.7	275	44.0
TraesCS2A02G248000	Triticum aestivum	HOM04x5M007573	ORTHO04x5M009717	3.6e-33	146.0	299	41.1
Sspon.02G0042330-1P	Saccharum spontaneum	HOM04x5M026634	ORTHO04x5M025286	7.9e-33	144.8	167	98.2
TraesCS5D02G268100	Triticum aestivum	HOM04x5M007573	ORTHO04x5M009717	5.7e-31	138.7	275	45.5
TraesCS5B02G259000	Triticum aestivum	HOM04x5M007573	ORTHO04x5M009717	4.8e-30	135.6	277	44.4
PH01249411G0010	Phyllostachys edulis	HOM04x5M007573	ORTHO04x5M009717	6.3e-30	135.2	133	66.2
OsR498G0713568600.01	Oryza sativa ssp. indica	HOM04x5M007573	ORTHO04x5M009717	2.4e-29	133.3	225	48.0
Seita.8G028900	Setaria italica	HOM04x5M007573	ORTHO04x5M009717	9.1e-29	131.3	290	49.7
LOC_Os07g06810	Oryza sativa ssp. japonica	HOM04x5M007573	ORTHO04x5M009717	5.7e-23	112.1	210	43.8
Zjn_sc00051.1.g01820.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M002876	ORTHO04x5M003544	2.5e-18	96.7	231	45.0
TRITD2Av1G133040	Triticum turgidum	HOM04x5M007573	ORTHO04x5M009717	3.1e-13	79.7	105	50.5
evm.TU.AsparagusV1_03.437.V1.1	Asparagus officinalis	HOM04x5M001892	ORTHO04x5M002029	6.5e-11	72.0	313	31.3
CALSI_Maker00029459	Calamus simplicifolius	HOM04x5M001892	ORTHO04x5M002029	1.2e-09	67.8	292	29.1
p5.00_sc02709_p0001	Elaeis guineensis	HOM04x5M001892	ORTHO04x5M002029	2.1e-09	67.0	357	29.1
ASH_gene10223	Apostasia shenzhenica	HOM04x5M001892	ORTHO04x5M002029	3.6e-09	66.2	280	30.0
Ma04_g29270	Musa acuminata	HOM04x5M001892	ORTHO04x5M002029	1.0e-08	64.7	356	27.5
PEQU_13390	Phalaenopsis equestris	HOM04x5M001892	ORTHO04x5M002029	5.2e-08	62.4	319	27.9
Spipo24G0030700	Spirodela polyrhiza	HOM04x5M001892	ORTHO04x5M002029	8.8e-08	61.6	87	49.4
GSVIVG01022511001	Vitis vinifera	HOM04x5M001892	ORTHO04x5M002029	8.8e-08	61.6	313	26.2
Misin01G055700	Miscanthus sinensis	HOM04x5M026634	ORTHO04x5M025286	1.5e-07	60.8	72	51.4
AT3G54740	Arabidopsis thaliana	HOM04x5M001892	ORTHO04x5M002029	2.0e-07	60.5	320	25.3
PH01000510G0710	Phyllostachys edulis	HOM04x5M000670	ORTHO04x5M000562	3.4e-07	59.7	49	67.3
Potri.016G065200	Populus trichocarpa	HOM04x5M001892	ORTHO04x5M002029	4.4e-07	59.3	104	37.5
ASH_gene16335	Apostasia shenzhenica	HOM04x5M001892	ORTHO04x5M002029	2.2e-06	57.0	308	28.2
Bradi1g56922	Brachypodium distachyon	HOM04x5M007573	ORTHO04x5M009717	2.8e-06	56.6	200	37.0
CALSI_Maker00009579	Calamus simplicifolius	HOM04x5M001892	ORTHO04x5M002029	4.9e-06	55.8	360	26.1

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment