Interactive Phylogenetics Module

Gene Id
AT4G00060

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G00060 Arabidopsis thaliana HOM04D005559 ORTHO04D007432 0.0e+00 2892.8 1482 100.0
AL6G53450 Arabidopsis lyrata HOM04D005559 ORTHO04D007432 0.0e+00 2678.7 1484 92.3
Carubv10002719m.g Capsella rubella HOM04D005559 ORTHO04D007432 0.0e+00 2527.3 1500 88.6
Tp6g00130 Schrenkiella parvula HOM04D005559 ORTHO04D007432 0.0e+00 2389.0 1470 84.8
Bo3g042130 Brassica oleracea HOM04D005559 ORTHO04D007432 0.0e+00 2340.5 1490 83.6
Brara.C02478 Brassica rapa HOM04D005559 ORTHO04D007432 0.0e+00 2312.3 1488 83.0
THA.LOC104801481 Tarenaya hassleriana HOM04D005559 ORTHO04D007432 0.0e+00 2098.9 1483 74.3
Ciclev10018476m.g Citrus clementina HOM04D005559 ORTHO04D007432 0.0e+00 1617.8 1573 57.9
Manes.05G049400 Manihot esculenta HOM04D005559 ORTHO04D007432 0.0e+00 1598.9 1575 57.0
TCA.TCM_005597 Theobroma cacao HOM04D005559 ORTHO04D007432 0.0e+00 1597.4 1551 57.4
HBR3416G012 Hevea brasiliensis HOM04D005559 ORTHO04D007432 0.0e+00 1585.5 1568 57.8
Gorai.007G088700 Gossypium raimondii HOM04D005559 ORTHO04D007432 0.0e+00 1545.4 1567 56.0
COL.COLO4_12485 Corchorus olitorius HOM04D005559 ORTHO04D007432 0.0e+00 1524.6 1552 56.4
RCO.g.30174.000216 Ricinus communis HOM04D005559 ORTHO04D007432 0.0e+00 1497.6 1510 56.1
Prupe.2G137200 Prunus persica HOM04D005559 ORTHO04D007432 0.0e+00 1444.5 1577 54.2
Ca_15914.g Cicer arietinum HOM04D005559 ORTHO04D007432 0.0e+00 1441.4 1530 54.6
TPR.G4985 Trifolium pratense HOM04D005559 ORTHO04D007432 0.0e+00 1431.4 1563 53.9
Vradi0278s00010 Vigna radiata var. radiata HOM04D005559 ORTHO04D007432 0.0e+00 1426.8 1526 54.1
C.cajan_36486.g Cajanus cajan HOM04D005559 ORTHO04D007432 0.0e+00 1419.8 1507 54.1
Pbr004080.3.g Pyrus bretschneideri HOM04D005559 ORTHO04D007432 0.0e+00 1411.4 1544 53.2
Glyma.03G032900 Glycine max HOM04D005559 ORTHO04D007432 0.0e+00 1409.4 1557 53.2
Medtr4g027425 Medicago truncatula HOM04D005559 ORTHO04D007432 0.0e+00 1403.3 1600 52.4
GSVIVG01018154001 Vitis vinifera HOM04D005559 ORTHO04D007432 0.0e+00 1403.3 1355 57.9
Eucgr.D02494 Eucalyptus grandis HOM04D005559 ORTHO04D007432 0.0e+00 1399.8 1460 54.7
CAN.G1872.3 Capsicum annuum HOM04D005559 ORTHO04D007432 0.0e+00 1385.9 1608 51.1
Pbr018471.2.g Pyrus bretschneideri HOM04D005559 ORTHO04D007432 0.0e+00 1373.6 1536 52.3
Cucsa.259890 Cucumis sativus L. HOM04D005559 ORTHO04D007432 0.0e+00 1364.4 1560 51.0
Solyc01g090860.2 Solanum lycopersicum HOM04D005559 ORTHO04D007432 0.0e+00 1350.5 1565 50.4
Achn354911 Actinidia chinensis HOM04D005559 ORTHO04D007432 0.0e+00 1334.7 1441 53.1
Migut.N01612 Erythranthe guttata HOM04D005559 ORTHO04D007432 0.0e+00 1325.5 1544 51.6
Peaxi162Scf00803g00223 Petunia axillaris HOM04D005559 ORTHO04D007432 0.0e+00 1310.4 1590 48.7
FVE03965 Fragaria vesca HOM04D005559 ORTHO04D007432 0.0e+00 1281.2 1618 49.0
Cc02_g24460 Coffea canephora HOM04D005559 ORTHO04D007432 0.0e+00 1258.4 1364 53.4
AUR62013660 Chenopodium quinoa HOM04D005559 ORTHO04D007432 0.0e+00 1253.8 1582 47.1
Bv1_018580_hiuz Beta vulgaris HOM04D005559 ORTHO04D007432 0.0e+00 1241.1 1592 48.7
AUR62004162 Chenopodium quinoa HOM04D005559 ORTHO04D007432 0.0e+00 1236.5 1489 48.4
NNU_18296 Nelumbo nucifera HOM04D005559 ORTHO04D007432 0.0e+00 1196.4 1464 48.7
UGI.Scf00285.13357 Utricularia gibba HOM04D005559 ORTHO04D007432 0.0e+00 1159.1 1522 46.8
DCAR_015878 Daucus carota HOM04D005559 ORTHO04D007432 0.0e+00 1149.8 1426 47.5
Potri.014G066000 Populus trichocarpa HOM04D005559 ORTHO04D007432 0.0e+00 1118.6 889 66.5
ATR0317G095 Amborella trichopoda HOM04D005559 ORTHO04D007432 9.8e-312 1072.8 1543 45.0
MELO3C005957 Cucumis melo HOM04D005559 ORTHO04D007432 2.3e-304 1048.5 1222 50.6
AH009084 Amaranthus hypochondriacus HOM04D005559 ORTHO04D007432 1.2e-281 973.0 846 60.5
Cpa.g.sc49.145 Carica papaya HOM04D005559 ORTHO04D007432 2.6e-271 938.7 920 58.2
LOC_Os06g45800 Oryza sativa ssp. japonica HOM04D005559 ORTHO04D007432 6.6e-259 897.5 1478 41.5
Zm00001d036629 Zea mays HOM04D005559 ORTHO04D007432 3.1e-248 862.1 1586 38.3
MDO.mRNA.g.1046.7 Malus domestica HOM04D005559 ORTHO04D007432 1.5e-218 763.5 833 52.9
Mapoly0072s0019 Marchantia polymorpha HOM04D005559 ORTHO04D007432 1.6e-175 620.5 1934 31.4
Pp3c16_11310 Physcomitrium patens HOM04D005559 ORTHO04D007432 2.8e-124 450.3 1721 28.4
Cla021087.g Citrullus lanatus HOM04D005559 ORTHO04D007432 7.7e-98 362.5 274 64.6
Cpa.g.sc49.147 Carica papaya HOM04D005559 ORTHO04D007432 2.2e-97 360.9 275 66.9
MELO3C005956 Cucumis melo HOM04D005559 ORTHO04D007432 3.4e-77 293.9 221 67.0
Glyma.01G135400 Glycine max HOM04D005559 ORTHO04D007432 2.4e-67 261.2 144 86.8
PGSC0003DMG401026018 Solanum tuberosum HOM04D005559 ORTHO04D007432 1.8e-62 245.0 207 58.0
PAB00038430 Picea abies HOM04D005559 ORTHO04D007432 5.4e-51 206.8 330 41.5
PAB00066393 Picea abies HOM04D005559 ORTHO04D007432 2.8e-47 194.5 296 38.9
PAB00044892 Picea abies HOM04D005559 ORTHO04D007432 1.5e-32 145.6 195 42.1
Araip.BHQ1D Arachis ipaensis HOM04D005559 ORTHO04D007432 4.0e-30 137.5 151 48.3
PAB00007371 Picea abies HOM04D005559 ORTHO04D007432 1.5e-29 135.6 105 62.9
Prupe.4G182900 Prunus persica HOM04D004339 ORTHO04D005444 1.2e-26 125.9 345 27.8
MDO.mRNA.g.1046.5 Malus domestica HOM04D005559 ORTHO04D007432 3.5e-26 124.4 103 59.2
PGSC0003DMG400025036 Solanum tuberosum HOM04D004339 ORTHO04D005444 3.0e-25 121.3 345 27.0
Manes.03G110700 Manihot esculenta HOM04D004339 ORTHO04D005444 3.9e-25 120.9 356 26.4
Migut.M00812 Erythranthe guttata HOM04D004339 ORTHO04D005444 3.9e-25 120.9 351 25.9
Ciclev10008024m.g Citrus clementina HOM04D004339 ORTHO04D005444 5.1e-25 120.6 351 27.1
Bv4_087050_jdfr Beta vulgaris HOM04D004339 ORTHO04D005444 8.7e-25 119.8 348 27.9
CAN.G1110.57 Capsicum annuum HOM04D004339 ORTHO04D005444 1.5e-24 119.0 347 27.1
MELO3C016705 Cucumis melo HOM04D004339 ORTHO04D005444 1.9e-24 118.6 350 26.9
Eucgr.F01119 Eucalyptus grandis HOM04D004339 ORTHO04D005444 1.9e-24 118.6 347 28.0
ZJU.LOC107403708 Ziziphus jujuba HOM04D004339 ORTHO04D005444 1.9e-24 118.6 350 27.4
Solyc10g006990.2 Solanum lycopersicum HOM04D004339 ORTHO04D005444 2.5e-24 118.2 345 26.1
RCO.g.30150.000025 Ricinus communis HOM04D004339 ORTHO04D005444 3.3e-24 117.9 356 27.5
Cucsa.123200 Cucumis sativus L. HOM04D004339 ORTHO04D005444 7.3e-24 116.7 353 26.9
PAB00029176 Picea abies HOM04D005559 ORTHO04D007432 9.6e-24 116.3 143 41.3
NNU_18297 Nelumbo nucifera HOM04D005559 ORTHO04D018093 1.6e-23 115.5 73 74.0
GSVIVG01014349001 Vitis vinifera HOM04D004339 ORTHO04D005444 2.8e-23 114.8 365 24.9
Pp3c24_20390 Physcomitrium patens HOM04D004339 ORTHO04D005444 4.8e-23 114.0 353 26.9
Pbr017434.1.g Pyrus bretschneideri HOM04D004339 ORTHO04D005444 4.8e-23 114.0 320 27.8
Cla023390.g Citrullus lanatus HOM04D004339 ORTHO04D005444 4.8e-23 114.0 353 26.6
AUR62029381 Chenopodium quinoa HOM04D004339 ORTHO04D005444 6.2e-23 113.6 338 27.8
Potri.001G400800 Populus trichocarpa HOM04D004339 ORTHO04D005444 1.1e-22 112.8 351 25.4
THA.LOC104799923 Tarenaya hassleriana HOM04D004339 ORTHO04D005444 1.4e-22 112.5 348 25.3
Araip.RWJ5V Arachis ipaensis HOM04D004339 ORTHO04D005444 5.3e-22 110.5 365 25.8
Mapoly0006s0037 Marchantia polymorpha HOM04D004339 ORTHO04D005444 9.0e-22 109.8 351 26.2
Tp6g15840 Schrenkiella parvula HOM04D004339 ORTHO04D005444 1.2e-21 109.4 345 25.8
TCA.TCM_031492 Theobroma cacao HOM04D004339 ORTHO04D005444 1.5e-21 109.0 350 26.3
Gorai.002G071000 Gossypium raimondii HOM04D004339 ORTHO04D005444 2.0e-21 108.6 393 26.7
AL8G28710 Arabidopsis lyrata HOM04D004339 ORTHO04D005444 2.6e-21 108.2 345 25.2
AT5G53770 Arabidopsis thaliana HOM04D004339 ORTHO04D005444 2.6e-21 108.2 345 24.9
Medtr2g079330 Medicago truncatula HOM04D004339 ORTHO04D005444 3.4e-21 107.8 345 25.8
Brara.J00870 Brassica rapa HOM04D004339 ORTHO04D005444 3.4e-21 107.8 321 26.5
Ciclev10008854m.g Citrus clementina HOM04D004339 ORTHO04D005444 4.4e-21 107.5 351 25.6
Bo9g112670 Brassica oleracea HOM04D004339 ORTHO04D005444 4.4e-21 107.5 320 25.6
ATR0730G126 Amborella trichopoda HOM04D004339 ORTHO04D005444 4.4e-21 107.5 352 25.3
Peaxi162Scf00027g02615 Petunia axillaris HOM04D004339 ORTHO04D005444 5.8e-21 107.1 320 26.2
Carubv10026211m.g Capsella rubella HOM04D004339 ORTHO04D005444 1.7e-20 105.5 328 25.3
TPR.G38993 Trifolium pratense HOM04D004339 ORTHO04D005444 1.7e-20 105.5 345 26.1
PAB00066341 Picea abies HOM04D005559 ORTHO04D007432 2.9e-20 104.8 120 44.2
DCAR_017144 Daucus carota HOM04D004339 ORTHO04D005444 3.8e-20 104.4 353 24.1
UGI.Scf00056.5552 Utricularia gibba HOM04D004339 ORTHO04D005444 4.9e-20 104.0 322 26.1
Zm00001d043907 Zea mays HOM04D004339 ORTHO04D005444 6.4e-20 103.6 352 26.1
C.cajan_13873.g Cajanus cajan HOM04D004339 ORTHO04D005444 8.4e-20 103.2 365 24.4
MCO11G842 Micromonas commoda HOM04D004339 ORTHO04D005444 1.9e-19 102.1 362 25.1
LOC_Os01g48210 Oryza sativa ssp. japonica HOM04D004339 ORTHO04D005444 3.2e-19 101.3 362 25.4
FVE00325 Fragaria vesca HOM04D004339 ORTHO04D005444 2.1e-18 98.6 345 26.7
SMO356G0731 Selaginella moellendorffii HOM04D004339 ORTHO04D005444 2.1e-18 98.6 348 25.9
AH009085 Amaranthus hypochondriacus HOM04D005559 ORTHO04D007432 3.5e-18 97.8 112 50.0
Cre17.g720750 Chlamydomonas reinhardtii HOM04D004339 ORTHO04D005444 1.0e-17 96.3 398 26.1
MCO14G101 Micromonas commoda HOM04D004339 ORTHO04D005444 1.3e-17 95.9 373 24.9
DCAR_015879 Daucus carota HOM04D005559 ORTHO04D007432 1.7e-17 95.5 47 83.0
Ca_06875.g Cicer arietinum HOM04D004339 ORTHO04D005444 3.9e-17 94.4 372 23.9
Cpa.g.sc80.55 Carica papaya HOM04D004339 ORTHO04D005444 5.1e-17 94.0 349 25.8
Cc05_g12110 Coffea canephora HOM04D004339 ORTHO04D005444 1.1e-16 92.8 330 26.1
Mapoly0145s0022 Marchantia polymorpha HOM04D004339 ORTHO04D005444 2.5e-16 91.7 318 22.6
HBR1249G004 Hevea brasiliensis HOM04D004339 ORTHO04D005444 3.3e-16 91.3 357 24.6
Mapoly0059s0047 Marchantia polymorpha HOM04D000441 ORTHO04D000302 4.3e-16 90.9 275 28.4
Glyma.13G277700 Glycine max HOM04D004339 ORTHO04D005444 1.1e-14 86.3 158 32.3
Bo3g054840 Brassica oleracea HOM04D005559 ORTHO04D062374 1.2e-13 82.8 143 40.6
Pp3c25_14360 Physcomitrium patens HOM04D000441 ORTHO04D000302 1.2e-10 72.8 251 25.5
Cre13.g574200 Chlamydomonas reinhardtii HOM04D004339 ORTHO04D005444 4.6e-10 70.9 313 24.6
Cre09.g403000 Chlamydomonas reinhardtii HOM04D004339 ORTHO04D005444 8.7e-09 66.6 150 33.3
COL.COLO4_09395 Corchorus olitorius HOM04D004339 ORTHO04D005444 1.1e-08 66.2 116 36.2
PAB00024517 Picea abies HOM04D005559 ORTHO04D007432 4.3e-08 64.3 101 38.6
AUR62034287 Chenopodium quinoa HOM04D004339 ORTHO04D005444 5.6e-08 63.9 162 28.4
AL3G41450 Arabidopsis lyrata HOM04D000039 ORTHO04D000120 2.1e-07 62.0 39 79.5

Actinidia chinensis (1 genes)
Amaranthus hypochondriacus (2 genes)
Amborella trichopoda (2 genes)
Arabidopsis lyrata (3 genes)
Arabidopsis thaliana (2 genes)
Arachis ipaensis (2 genes)
Beta vulgaris (2 genes)
Brassica oleracea (3 genes)
Brassica rapa (2 genes)
Cajanus cajan (2 genes)
Capsella rubella (2 genes)
Capsicum annuum (2 genes)
Carica papaya (3 genes)
Chenopodium quinoa (4 genes)
Chlamydomonas reinhardtii (3 genes)
Cicer arietinum (2 genes)
Citrullus lanatus (2 genes)
Citrus clementina (3 genes)
Coffea canephora (2 genes)
Corchorus olitorius (2 genes)
Cucumis melo (3 genes)
Cucumis sativus L. (2 genes)
Daucus carota (3 genes)
Erythranthe guttata (2 genes)
Eucalyptus grandis (2 genes)
Fragaria vesca (2 genes)
Glycine max (3 genes)
Gossypium raimondii (2 genes)
Hevea brasiliensis (2 genes)
Malus domestica (2 genes)
Manihot esculenta (2 genes)
Marchantia polymorpha (4 genes)
Medicago truncatula (2 genes)
Micromonas commoda (2 genes)
Nelumbo nucifera (2 genes)
Oryza sativa ssp. japonica (2 genes)
Petunia axillaris (2 genes)
Physcomitrium patens (3 genes)
Picea abies (7 genes)
Populus trichocarpa (2 genes)
Prunus persica (2 genes)
Pyrus bretschneideri (3 genes)
Ricinus communis (2 genes)
Schrenkiella parvula (2 genes)
Selaginella moellendorffii (1 genes)
Solanum lycopersicum (2 genes)
Solanum tuberosum (2 genes)
Tarenaya hassleriana (2 genes)
Theobroma cacao (2 genes)
Trifolium pratense (2 genes)
Utricularia gibba (2 genes)
Vigna radiata var. radiata (1 genes)
Vitis vinifera (2 genes)
Zea mays (2 genes)
Ziziphus jujuba (1 genes)

Program Settings