Functional Clusters Overview top

Species and Available Functional Cluster Experiments

Organisms GO Experiments InterPro Experiments
Actinidia chinensis 1 , 2 , 3 , 4 5 , 6
Amaranthus hypochondriacus 1 , 2 , 3 , 4 5 , 6
Amborella trichopoda 1 , 2 , 3 , 4 5 , 6
Arabidopsis lyrata 1 , 2 , 3 , 4 5 , 6
Arabidopsis thaliana 1 , 2 , 3 , 4 5 , 6
Arachis ipaensis 1 , 2 , 3 , 4 5 , 6
Beta vulgaris 1 , 2 , 3 , 4 5 , 6
Brassica oleracea 1 , 2 , 3 , 4 5 , 6
Brassica rapa 1 , 2 , 3 , 4 5 , 6
Cajanus cajan 1 , 2 , 3 , 4 5 , 6
Capsella rubella 1 , 2 , 3 , 4 5 , 6
Capsicum annuum 1 , 2 , 3 , 4 5 , 6
Carica papaya 1 , 2 , 3 , 4 5 , 6
Chenopodium quinoa 1 , 2 , 3 , 4 5 , 6
Chlamydomonas reinhardtii 1 , 2 , 3 , 4 5 , 6
Cicer arietinum 1 , 2 , 3 , 4 5 , 6
Citrullus lanatus 1 , 2 , 3 , 4 5 , 6
Citrus clementina 1 , 2 , 3 , 4 5 , 6
Coffea canephora 1 , 2 , 3 , 4 5 , 6
Corchorus olitorius 1 , 2 , 3 , 4 5 , 6
Cucumis melo 1 , 2 , 3 , 4 5 , 6
Cucumis sativus L. 1 , 2 , 3 , 4 5 , 6
Daucus carota 1 , 2 , 3 , 4 5 , 6
Erythranthe guttata 1 , 2 , 3 , 4 5 , 6
Eucalyptus grandis 1 , 2 , 3 , 4 5 , 6
Fragaria vesca 1 , 2 , 3 , 4 5 , 6
Glycine max 1 , 2 , 3 , 4 5 , 6
Gossypium raimondii 1 , 2 , 3 , 4 5 , 6
Hevea brasiliensis 1 , 2 , 3 , 4 5 , 6
Malus domestica 1 , 2 , 3 , 4 5 , 6
Manihot esculenta 1 , 2 , 3 , 4 5 , 6
Marchantia polymorpha 1 , 2 , 3 , 4 5 , 6
Medicago truncatula 1 , 2 , 3 , 4 5 , 6
Micromonas commoda 1 , 2 , 3 , 4 5 , 6
Nelumbo nucifera 1 , 2 , 3 , 4 5 , 6
Oryza sativa ssp. japonica 1 , 2 , 3 , 4 5 , 6
Petunia axillaris 1 , 2 , 3 , 4 5 , 6
Physcomitrium patens 1 , 2 , 3 , 4 5 , 6
Picea abies Unavailable Unavailable
Populus trichocarpa 1 , 2 , 3 , 4 5 , 6
Prunus persica 1 , 2 , 3 , 4 5 , 6
Pyrus bretschneideri 1 , 2 , 3 , 4 5 , 6
Ricinus communis 1 , 2 , 3 , 4 5 , 6
Schrenkiella parvula 1 , 2 , 3 , 4 5 , 6
Selaginella moellendorffii 1 , 2 , 3 , 4 5 , 6
Solanum lycopersicum 1 , 2 , 3 , 4 5 , 6
Solanum tuberosum 1 , 2 , 3 , 4 5 , 6
Tarenaya hassleriana 1 , 2 , 3 , 4 5 , 6
Theobroma cacao 1 , 2 , 3 , 4 5 , 6
Trifolium pratense 1 , 2 , 3 , 4 5 , 6
Utricularia gibba 1 , 2 , 3 , 4 5 , 6
Vigna radiata var. radiata 1 , 2 , 3 , 4 5 , 6
Vitis vinifera 1 , 2 , 3 , 4 5 , 6
Zea mays 1 , 2 , 3 , 4 5 , 6
Ziziphus jujuba 1 , 2 , 3 , 4 5 , 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 GO Primary GO data only. 2 30 80 0.001 X
2 GO Primary GO data only. 2 30 80 0.001 V
3 GO All GO data. 2 30 80 0.001 X
4 GO All GO data. 2 30 80 0.001 V
5 InterPro No filter applied. 2 30 80 0.001 X
6 InterPro No filter applied. 2 30 80 0.001 V