Functional Clusters Overview

Overview

This tool displays detected clusters of functionally related genes on a per chromosome basis.
Detection of these clusters is done using the CHunter tool, and can be based upon multiple types of functional annotation: GO, InterPro, MapMan, ...

Available Data

OrganismGO ExperimentsInterPro Experiments
Actinidia chinensis1 , 2 , 3 , 45 , 6
Amaranthus hypochondriacus1 , 2 , 3 , 45 , 6
Amborella trichopoda1 , 2 , 3 , 45 , 6
Arabidopsis lyrata1 , 2 , 3 , 45 , 6
Arabidopsis thaliana1 , 2 , 3 , 45 , 6
Arachis ipaensis1 , 2 , 3 , 45 , 6
Beta vulgaris1 , 2 , 3 , 45 , 6
Brassica oleracea1 , 2 , 3 , 45 , 6
Brassica rapa1 , 2 , 3 , 45 , 6
Cajanus cajan1 , 2 , 3 , 45 , 6
Capsella rubella1 , 2 , 3 , 45 , 6
Capsicum annuum1 , 2 , 3 , 45 , 6
Carica papaya1 , 2 , 3 , 45 , 6
Chenopodium quinoa1 , 2 , 3 , 45 , 6
Chlamydomonas reinhardtii1 , 2 , 3 , 45 , 6
Cicer arietinum1 , 2 , 3 , 45 , 6
Citrullus lanatus1 , 2 , 3 , 45 , 6
Citrus clementina1 , 2 , 3 , 45 , 6
Coffea canephora1 , 2 , 3 , 45 , 6
Corchorus olitorius1 , 2 , 3 , 45 , 6
Cucumis melo1 , 2 , 3 , 45 , 6
Cucumis sativus L.1 , 2 , 3 , 45 , 6
Daucus carota1 , 2 , 3 , 45 , 6
Erythranthe guttata1 , 2 , 3 , 45 , 6
Eucalyptus grandis1 , 2 , 3 , 45 , 6
Fragaria vesca1 , 2 , 3 , 45 , 6
Glycine max1 , 2 , 3 , 45 , 6
Gossypium raimondii1 , 2 , 3 , 45 , 6
Hevea brasiliensis1 , 2 , 3 , 45 , 6
Malus domestica1 , 2 , 3 , 45 , 6
Manihot esculenta1 , 2 , 3 , 45 , 6
Marchantia polymorpha1 , 2 , 3 , 45 , 6
Medicago truncatula1 , 2 , 3 , 45 , 6
Micromonas commoda1 , 2 , 3 , 45 , 6
Nelumbo nucifera1 , 2 , 3 , 45 , 6
Oryza sativa ssp. japonica1 , 2 , 3 , 45 , 6
Petunia axillaris1 , 2 , 3 , 45 , 6
Physcomitrella patens1 , 2 , 3 , 45 , 6
Picea abiesUnavailableUnavailable
Populus trichocarpa1 , 2 , 3 , 45 , 6
Prunus persica1 , 2 , 3 , 45 , 6
Pyrus bretschneideri1 , 2 , 3 , 45 , 6
Ricinus communis1 , 2 , 3 , 45 , 6
Schrenkiella parvula1 , 2 , 3 , 45 , 6
Selaginella moellendorffii1 , 2 , 3 , 45 , 6
Solanum lycopersicum1 , 2 , 3 , 45 , 6
Solanum tuberosum1 , 2 , 3 , 45 , 6
Tarenaya hassleriana1 , 2 , 3 , 45 , 6
Theobroma cacao1 , 2 , 3 , 45 , 6
Trifolium pratense1 , 2 , 3 , 45 , 6
Utricularia gibba1 , 2 , 3 , 45 , 6
Vigna radiata var. radiata1 , 2 , 3 , 45 , 6
Vitis vinifera1 , 2 , 3 , 45 , 6
Zea mays1 , 2 , 3 , 45 , 6
Ziziphus jujuba1 , 2 , 3 , 45 , 6
Exp idData typeData filterMin genes clusterMax genes clusterMax cluster sizeMin e-valueTandems removal
2GOPrimary GO data only.230800.001V
4GOAll GO data.230800.001V
3GOAll GO data.230800.001X
5InterProNo filter applied.230800.001X
6InterProNo filter applied.230800.001V
1GOPrimary GO data only.230800.001X