Functional clusters

Information

  • Type MapMan
  • Description Cytoskeleton organisation

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr7 1 CH_acertr_247 5 7 0.0000529656
Arabidopsis thaliana Chr1 1 CH_ath_294 5 12 0.000132817
Brassica oleracea C5 1 CH_bol_335 5 9 0.000313615
Brassica rapa A06 1 CH_bra_364 5 9 0.000744604
Capsella rubella scaffold_1 1 CH_cru_430 5 9 0.000784501
Schrenkiella parvula ch1-1 1 CH_spa_281 5 9 0.000767565
Acer truncatum chr7 2 CH_acertr_247 5 7 0.0000529656
Arabidopsis thaliana Chr1 2 CH_ath_294 5 12 0.000132817
Brassica oleracea C5 2 CH_bol_335 5 9 0.000313615
Brassica rapa A06 2 CH_bra_364 5 9 0.000744604
Capsella rubella scaffold_1 2 CH_cru_430 5 9 0.000784501
Schrenkiella parvula ch1-1 2 CH_spa_281 5 9 0.000767565

Available child term results

Ontology identifier Description Number of clusters
20.1.1.1 Cytoskeleton organisation.microtubular network.alpha-beta-Tubulin heterodimer.component alpha-Tubulin 12
20.1.1.2 Cytoskeleton organisation.microtubular network.alpha-beta-Tubulin heterodimer.component beta-Tubulin 12
20.1.2.1.2 Cytoskeleton organisation.microtubular network.microtubule Tubulin heterodimer formation.gamma-Tubulin Ring Complex (gamma-TuRC).component GCP2 6
20.1.2.1.3 Cytoskeleton organisation.microtubular network.microtubule Tubulin heterodimer formation.gamma-Tubulin Ring Complex (gamma-TuRC).component GCP3 2
20.1.2.1.4 Cytoskeleton organisation.microtubular network.microtubule Tubulin heterodimer formation.gamma-Tubulin Ring Complex (gamma-TuRC).component GCP4 6
20.1.2.1.5 Cytoskeleton organisation.microtubular network.microtubule Tubulin heterodimer formation.gamma-Tubulin Ring Complex (gamma-TuRC).component GCP5 10
20.1.2.1.6 Cytoskeleton organisation.microtubular network.microtubule Tubulin heterodimer formation.gamma-Tubulin Ring Complex (gamma-TuRC).component GCP6 24
20.1.2.1.7 Cytoskeleton organisation.microtubular network.microtubule Tubulin heterodimer formation.gamma-Tubulin Ring Complex (gamma-TuRC).regulatory component GCP-WD/NEDD1 12
20.1.2.2.1 Cytoskeleton organisation.microtubular network.microtubule Tubulin heterodimer formation.Augmin gamma-Tubulin Ring Complex recruiting complex.component AUG1 2
20.1.2.2.2 Cytoskeleton organisation.microtubular network.microtubule Tubulin heterodimer formation.Augmin gamma-Tubulin Ring Complex recruiting complex.component AUG2 6
20.1.2.2.3 Cytoskeleton organisation.microtubular network.microtubule Tubulin heterodimer formation.Augmin gamma-Tubulin Ring Complex recruiting complex.component AUG3 4
20.1.2.2.4 Cytoskeleton organisation.microtubular network.microtubule Tubulin heterodimer formation.Augmin gamma-Tubulin Ring Complex recruiting complex.component AUG4 11
20.1.2.2.6 Cytoskeleton organisation.microtubular network.microtubule Tubulin heterodimer formation.Augmin gamma-Tubulin Ring Complex recruiting complex.component AUG6 8
20.1.2.2.7 Cytoskeleton organisation.microtubular network.microtubule Tubulin heterodimer formation.Augmin gamma-Tubulin Ring Complex recruiting complex.component AUG7 6
20.1.2.2.9 Cytoskeleton organisation.microtubular network.microtubule Tubulin heterodimer formation.Augmin gamma-Tubulin Ring Complex recruiting complex.accessory component EDE1 2
20.1.2.3 Cytoskeleton organisation.microtubular network.microtubule Tubulin heterodimer formation.CCT-interacting tubulin folding cofactor (PLP3) 4
20.1.3.10 Cytoskeleton organisation.microtubular network.Kinesin microtubule-based motor protein activities.motor protein (Kinesin-12) 6
20.1.3.12 Cytoskeleton organisation.microtubular network.Kinesin microtubule-based motor protein activities.motor protein (Kinesin-14) 6
20.1.3.13 Cytoskeleton organisation.microtubular network.Kinesin microtubule-based motor protein activities.motor protein (Kinesin-U) 10
20.1.3.2 Cytoskeleton organisation.microtubular network.Kinesin microtubule-based motor protein activities.motor protein (Kinesin-2) 2
20.1.3.3 Cytoskeleton organisation.microtubular network.Kinesin microtubule-based motor protein activities.motor protein (Kinesin-4) 4
20.1.3.4 Cytoskeleton organisation.microtubular network.Kinesin microtubule-based motor protein activities.motor protein (Kinesin-5) 6
20.1.3.9 Cytoskeleton organisation.microtubular network.Kinesin microtubule-based motor protein activities.motor protein (Kinesin-10) 4
20.1.4 Cytoskeleton organisation.microtubular network.Dynein microtubule-based motor protein complex 2
20.1.4.2 Cytoskeleton organisation.microtubular network.Dynein microtubule-based motor protein complex.intermediate chain 2
20.1.5.1.1 Cytoskeleton organisation.microtubular network.microtubule dynamics.microtubule (MT) plus-end-tracking.MT plus-end-tracking protein (EB1) 4
20.1.5.1.2 Cytoskeleton organisation.microtubular network.microtubule dynamics.microtubule (MT) plus-end-tracking.MT plus-end-tracking protein (GPT) 6
20.1.5.1.3 Cytoskeleton organisation.microtubular network.microtubule dynamics.microtubule (MT) plus-end-tracking.MT plus-end-tracking protein (SPR1) 18
20.1.5.2 Cytoskeleton organisation.microtubular network.microtubule dynamics.microtubule-stabilizing factor (WDL) 2
20.1.5.3 Cytoskeleton organisation.microtubular network.microtubule dynamics.microtubule growth pause state regulator (SPR2) 6
20.2.1 Cytoskeleton organisation.microfilament network.actin filament protein 34
20.2.2.1.1 Cytoskeleton organisation.microfilament network.actin polymerisation.Arp2/3 actin polymerization initiation complex.component Arp2 4
20.2.2.1.2 Cytoskeleton organisation.microfilament network.actin polymerisation.Arp2/3 actin polymerization initiation complex.component Arp3 6
20.2.2.1.3 Cytoskeleton organisation.microfilament network.actin polymerisation.Arp2/3 actin polymerization initiation complex.component ArpC1 6
20.2.2.1.4 Cytoskeleton organisation.microfilament network.actin polymerisation.Arp2/3 actin polymerization initiation complex.component ArpC2 8
20.2.2.1.5 Cytoskeleton organisation.microfilament network.actin polymerisation.Arp2/3 actin polymerization initiation complex.component ArpC3 4
20.2.2.1.6 Cytoskeleton organisation.microfilament network.actin polymerisation.Arp2/3 actin polymerization initiation complex.component ArpC4 4
20.2.2.1.7 Cytoskeleton organisation.microfilament network.actin polymerisation.Arp2/3 actin polymerization initiation complex.component ArpC5 4
20.2.2.2.1 Cytoskeleton organisation.microfilament network.actin polymerisation.SCAR/WAVE ARP2/3-activating complex.component PIROGI 2
20.2.2.2.2 Cytoskeleton organisation.microfilament network.actin polymerisation.SCAR/WAVE ARP2/3-activating complex.component NAP1 4
20.2.2.2.3 Cytoskeleton organisation.microfilament network.actin polymerisation.SCAR/WAVE ARP2/3-activating complex.component BRK1 1
20.2.2.2.4 Cytoskeleton organisation.microfilament network.actin polymerisation.SCAR/WAVE ARP2/3-activating complex.component SCAR 5
20.2.2.2.5 Cytoskeleton organisation.microfilament network.actin polymerisation.SCAR/WAVE ARP2/3-activating complex.component ABIL 5
20.2.2.3 Cytoskeleton organisation.microfilament network.actin polymerisation.profilin actin nucleation protein 107
20.2.2.4 Cytoskeleton organisation.microfilament network.actin polymerisation.fimbrin actin-crosslinking factor 6
20.2.2.5 Cytoskeleton organisation.microfilament network.actin polymerisation.villin actin-crosslinking factor 15
20.2.2.6 Cytoskeleton organisation.microfilament network.actin polymerisation.formin actin filament elongation factor activities 2
20.2.2.6.1 Cytoskeleton organisation.microfilament network.actin polymerisation.formin actin filament elongation factor activities.group-I formin 4
20.2.2.6.2 Cytoskeleton organisation.microfilament network.actin polymerisation.formin actin filament elongation factor activities.group-II formin 24
20.2.2.7.1 Cytoskeleton organisation.microfilament network.actin polymerisation.actin capping protein heterodimer.component alpha 8
20.2.2.7.2 Cytoskeleton organisation.microfilament network.actin polymerisation.actin capping protein heterodimer.component beta 10
20.2.2.8 Cytoskeleton organisation.microfilament network.actin polymerisation.actin-depolymerizing factor (ADF) 18
20.2.3.1 Cytoskeleton organisation.microfilament network.actin organisation.regulator protein (SCAB) 6
20.2.3.2 Cytoskeleton organisation.microfilament network.actin organisation.regulator protein (CAP1) 4
20.2.4 Cytoskeleton organisation.microfilament network.myosin microfilament-based motor protein activities 4
20.2.4.2 Cytoskeleton organisation.microfilament network.myosin microfilament-based motor protein activities.class VIII myosin 2
20.2.4.3 Cytoskeleton organisation.microfilament network.myosin microfilament-based motor protein activities.myosin receptor (MyoB) 2
20.2.4.4 Cytoskeleton organisation.microfilament network.myosin microfilament-based motor protein activities.myosin adaptor protein (MadA) 6
20.2.4.5 Cytoskeleton organisation.microfilament network.myosin microfilament-based motor protein activities.myosin adaptor protein (MadB) 8
20.2.5.1 Cytoskeleton organisation.microfilament network.actin-membrane compartment interaction.NET-type actin-membrane nexus protein families 2
20.2.5.1.1 Cytoskeleton organisation.microfilament network.actin-membrane compartment interaction.NET-type actin-membrane nexus protein families.actin-binding protein (NET1) 16
20.2.5.1.2 Cytoskeleton organisation.microfilament network.actin-membrane compartment interaction.NET-type actin-membrane nexus protein families.actin-binding protein (NET2) 6
20.2.5.1.4 Cytoskeleton organisation.microfilament network.actin-membrane compartment interaction.NET-type actin-membrane nexus protein families.actin-binding protein (NET4) 8
20.3.1.2 Cytoskeleton organisation.actin and tubulin folding.CCT chaperonin folding complex.subunit beta (CCT2) 2
20.3.1.4 Cytoskeleton organisation.actin and tubulin folding.CCT chaperonin folding complex.subunit delta (CCT4) 2
20.3.1.6 Cytoskeleton organisation.actin and tubulin folding.CCT chaperonin folding complex.subunit zeta (CCT6) 12
20.3.1.7 Cytoskeleton organisation.actin and tubulin folding.CCT chaperonin folding complex.subunit eta (CCT7) 2
20.3.1.8 Cytoskeleton organisation.actin and tubulin folding.CCT chaperonin folding complex.subunit theta (CCT8) 8
20.3.2.1 Cytoskeleton organisation.actin and tubulin folding.Prefoldin co-chaperone complex.component PFD1 4
20.3.2.2 Cytoskeleton organisation.actin and tubulin folding.Prefoldin co-chaperone complex.component PFD2 4
20.3.2.3 Cytoskeleton organisation.actin and tubulin folding.Prefoldin co-chaperone complex.component PFD3 4
20.3.2.4 Cytoskeleton organisation.actin and tubulin folding.Prefoldin co-chaperone complex.component PFD4 8
20.3.2.5 Cytoskeleton organisation.actin and tubulin folding.Prefoldin co-chaperone complex.component PFD5 6
20.3.2.6 Cytoskeleton organisation.actin and tubulin folding.Prefoldin co-chaperone complex.component PFD6 4
20.3.3.1 Cytoskeleton organisation.actin and tubulin folding.post-CCT Tubulin folding pathway.TFC tubulin folding cofactors 2
20.3.3.1.1 Cytoskeleton organisation.actin and tubulin folding.post-CCT Tubulin folding pathway.TFC tubulin folding cofactors.cofactor (TFC-A) 2
20.3.3.1.3 Cytoskeleton organisation.actin and tubulin folding.post-CCT Tubulin folding pathway.TFC tubulin folding cofactors.cofactor (TFC-C) 6
20.3.3.1.4 Cytoskeleton organisation.actin and tubulin folding.post-CCT Tubulin folding pathway.TFC tubulin folding cofactors.cofactor (TFC-D) 26
20.3.3.1.5 Cytoskeleton organisation.actin and tubulin folding.post-CCT Tubulin folding pathway.TFC tubulin folding cofactors.cofactor (TFC-E) 12
20.3.3.2 Cytoskeleton organisation.actin and tubulin folding.post-CCT Tubulin folding pathway.tubulin folding cofactor (ARL2) 4
20.4 Cytoskeleton organisation.nuclear dynamics 1
20.4.1.1 Cytoskeleton organisation.nuclear dynamics.nuclear envelope to cytoskeleton bridging.actin cytoskeleton connecting factor (SINE) 6
20.4.2.1.1 Cytoskeleton organisation.nuclear dynamics.nuclear movement.SUN-WIP cytoskeleton-nucleoskeleton-linker complex.inner nuclear envelope component Cter-SUN 12
20.4.2.1.2 Cytoskeleton organisation.nuclear dynamics.nuclear movement.SUN-WIP cytoskeleton-nucleoskeleton-linker complex.outer nuclear envelope component WIP 10
20.4.2.2 Cytoskeleton organisation.nuclear dynamics.nuclear movement.myosin-SUN-WIP adaptor (WIT) 10
20.4.3.1 Cytoskeleton organisation.nuclear dynamics.nuclear shape determination.lamin-like protein (CRWN) 6
20.4.3.2 Cytoskeleton organisation.nuclear dynamics.nuclear shape determination.CRWN-interacting protein (KAKU4) 2
20.4.3.3 Cytoskeleton organisation.nuclear dynamics.nuclear shape determination.regulatory factor (NEAP) 6
20.4.3.4 Cytoskeleton organisation.nuclear dynamics.nuclear shape determination.regulatory factor (SUN3/4/5) 8
20.5.1 Cytoskeleton organisation.plastid movement.motility factor (CHUP) 2
20.5.2 Cytoskeleton organisation.plastid movement.accessory motility factor (KAC) 16
20.5.4 Cytoskeleton organisation.plastid movement.actin stability factor (PMI1) 6
20.5.5 Cytoskeleton organisation.plastid movement.actin stability co-factor (PMIR) 8
20.5.6 Cytoskeleton organisation.plastid movement.actin filament reorganisation factor (JAC1) 4
20.6.1 Cytoskeleton organisation.cytoskeleton-plasma membrane-cell wall interface.integrin-like protein (AT14a) 73
20.7.1 Cytoskeleton organisation.endoplasmic reticulum-cytoskeleton-plasma membrane interface.contact site protein (VAP27) 23

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001