Functional clusters

Information

  • Type MapMan
  • Description Cytoskeleton organisation.microfilament network.actin polymerisation.profilin actin nucleation protein

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-2 1 CH_aar_271 2 2 0.000912326
Aethionema arabicum LG-8 1 CH_aar_272 2 2 0.000912326
Arabidopsis lyrata scaffold_7 1 CH_aly_426 2 2 0.000660044
Arabidopsis lyrata scaffold_3 1 CH_aly_427 2 2 0.000660044
Avicennia marina ScioBoG_13798_HRSCAF_13862 1 CH_ama_143 2 2 0.000862218
Avicennia marina ScioBoG_52287_HRSCAF_52434 1 CH_ama_144 2 2 0.000862218
Arabidopsis thaliana Chr2 1 CH_ath_432 2 3 0.000859439
Amborella trichopoda AmTr_v1.0_scaffold00056 1 CH_atr_200 2 3 0.0000794407
Beta vulgaris Chr2_EL10_PGA_scaffold6 1 CH_bvu_274 2 2 0.00049675
Cannabis sativa NC_044371.1 1 CH_cansat_87 4 15 0.00000000579389
Cicer arietinum L. Ca_LG6_v3 1 CH_car_313 2 2 0.000778301
Corylus avellana 8 1 CH_cav_366 2 2 0.000230008
Coffea canephora chr6 1 CH_ccan_319 2 10 0.000459951
Citrus clementina scaffold_1 1 CH_ccl_404 2 2 0.000246093
Carpinus fangiana Cfa01 1 CH_cfa_313 2 2 0.000227204
Cardamine hirsuta Chr7 1 CH_chi_426 2 2 0.000691204
Carya illinoinensis Chr04 1 CH_cil_561 2 2 0.000929742
Carya illinoinensis Chr03 1 CH_cil_562 2 2 0.000929742
Cucumis melo chr05 1 CH_cme_245 2 2 0.000200133
Corchorus olitorius AWUE01022432.1 1 CH_col_84 2 2 0.000292099
Carica papaya supercontig_78 1 CH_cpa_229 2 2 0.0000950661
Capsella rubella scaffold_7 1 CH_cru_426 2 2 0.000731154
Capsella rubella scaffold_3 1 CH_cru_427 2 2 0.000731154
Cucumis sativus L. chr2 1 CH_csa_270 2 2 0.000250428
Erigeron canadensis Conyza_canadensis_scaffold:5 1 CH_eca_399 2 2 0.000269233
Erigeron canadensis Conyza_canadensis_scaffold:4 1 CH_eca_508 2 3 0.000807658
Erythranthe guttata scaffold_11 1 CH_egut_469 2 2 0.000728147
Fragaria x ananassa Fvb1-4 1 CH_fan_252 3 5 0.00000418987
Glycine max Gm08 1 CH_gma_163 3 3 0.000000121016
Lupinus albus Lalb_Chr14 1 CH_lal_110 3 3 0.00000118167
Lupinus albus Lalb_Chr09 1 CH_lal_111 3 3 0.00000118167
Lupinus albus Lalb_Chr05 1 CH_lal_134 3 4 0.00000472563
Lonicera japonica GWHAAZE00000007 1 CH_lonja_639 2 2 0.000898311
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_533 2 2 0.00077101
Lactuca sativa Lsat_1_v8_lg_8 1 CH_lsa_534 2 2 0.00077101
Lactuca sativa Lsat_1_v8_lg_7 1 CH_lsa_535 2 2 0.00077101
Magnolia biondii Chr04 1 CH_mbi_108 3 3 0.00000000353808
Olea europaea chr13 1 CH_oeu_76 3 3 0.000000359022
Oryza sativa ssp. japonica chr10 1 CH_osa_323 2 2 0.000316874
Punica granatum NC_045128.1 1 CH_pgr_368 2 2 0.000750356
Prunus persica Pp07 1 CH_ppe_510 2 2 0.000745962
Pisum sativum chr7LG7 1 CH_psa_232 2 2 0.0000521635
Phaseolus vulgaris Chr02 1 CH_pvu_132 3 3 0.0000000809765
Quercus lobata CM012294 1 CH_qlo_362 3 3 0.0000000159937
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_428 4 65 0.0000161166
Schrenkiella parvula ch7-5 1 CH_spa_301 2 2 0.00078734
Schrenkiella parvula ch3-6 1 CH_spa_302 2 2 0.00078734
Solanum tuberosum ST4.03ch12 1 CH_stu_610 2 2 0.000768679
Trochodendron aralioides group9 1 CH_tar_184 3 4 0.00000259476
Theobroma cacao Chromosome_9 1 CH_tca_401 2 2 0.000439432
Trifolium pratense Tp57577_TGAC_v2_LG3 1 CH_tpr_322 2 2 0.000227092
Vigna mungo CM024069.1 1 CH_vmu_302 2 2 0.000193842
Vitis vinifera chr11 1 CH_vvi_390 2 2 0.000456378
Aethionema arabicum LG-2 2 CH_aar_271 2 2 0.000912326
Aethionema arabicum LG-8 2 CH_aar_272 2 2 0.000912326
Arabidopsis lyrata scaffold_7 2 CH_aly_426 2 2 0.000660044
Arabidopsis lyrata scaffold_3 2 CH_aly_427 2 2 0.000660044
Avicennia marina ScioBoG_13798_HRSCAF_13862 2 CH_ama_143 2 2 0.000862218
Avicennia marina ScioBoG_52287_HRSCAF_52434 2 CH_ama_144 2 2 0.000862218
Arabidopsis thaliana Chr2 2 CH_ath_432 2 3 0.000859439
Amborella trichopoda AmTr_v1.0_scaffold00056 2 CH_atr_200 2 3 0.0000794407
Beta vulgaris Chr2_EL10_PGA_scaffold6 2 CH_bvu_274 2 2 0.00049675
Cannabis sativa NC_044371.1 2 CH_cansat_87 4 15 0.00000000579389
Cicer arietinum L. Ca_LG6_v3 2 CH_car_313 2 2 0.000778301
Corylus avellana 8 2 CH_cav_366 2 2 0.000230008
Coffea canephora chr6 2 CH_ccan_319 2 10 0.000459951
Citrus clementina scaffold_1 2 CH_ccl_404 2 2 0.000246093
Carpinus fangiana Cfa01 2 CH_cfa_313 2 2 0.000227204
Cardamine hirsuta Chr7 2 CH_chi_426 2 2 0.000691204
Carya illinoinensis Chr04 2 CH_cil_561 2 2 0.000929742
Carya illinoinensis Chr03 2 CH_cil_562 2 2 0.000929742
Cucumis melo chr05 2 CH_cme_245 2 2 0.000200133
Corchorus olitorius AWUE01022432.1 2 CH_col_84 2 2 0.000292099
Carica papaya supercontig_78 2 CH_cpa_229 2 2 0.0000950661
Capsella rubella scaffold_7 2 CH_cru_426 2 2 0.000731154
Capsella rubella scaffold_3 2 CH_cru_427 2 2 0.000731154
Cucumis sativus L. chr2 2 CH_csa_270 2 2 0.000250428
Erigeron canadensis Conyza_canadensis_scaffold:5 2 CH_eca_399 2 2 0.000269233
Erigeron canadensis Conyza_canadensis_scaffold:4 2 CH_eca_508 2 3 0.000807658
Erythranthe guttata scaffold_11 2 CH_egut_469 2 2 0.000728147
Fragaria x ananassa Fvb1-4 2 CH_fan_252 3 5 0.00000418987
Glycine max Gm08 2 CH_gma_163 3 3 0.000000121016
Lupinus albus Lalb_Chr14 2 CH_lal_110 3 3 0.00000118167
Lupinus albus Lalb_Chr09 2 CH_lal_111 3 3 0.00000118167
Lupinus albus Lalb_Chr05 2 CH_lal_134 3 4 0.00000472563
Lotus japonicus chr2 2 CH_lja_374 2 2 0.000429046
Lonicera japonica GWHAAZE00000007 2 CH_lonja_639 2 2 0.000898311
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_533 2 2 0.00077101
Lactuca sativa Lsat_1_v8_lg_8 2 CH_lsa_534 2 2 0.00077101
Lactuca sativa Lsat_1_v8_lg_7 2 CH_lsa_535 2 2 0.00077101
Magnolia biondii Chr04 2 CH_mbi_108 3 3 0.00000000353808
Olea europaea chr13 2 CH_oeu_76 3 3 0.000000359022
Oryza sativa ssp. japonica chr10 2 CH_osa_323 2 2 0.000316874
Punica granatum NC_045128.1 2 CH_pgr_368 2 2 0.000750356
Prunus persica Pp07 2 CH_ppe_510 2 2 0.000745962
Pisum sativum chr7LG7 2 CH_psa_232 2 2 0.0000521635
Phaseolus vulgaris Chr02 2 CH_pvu_132 3 3 0.0000000809765
Quercus lobata CM012294 2 CH_qlo_362 3 3 0.0000000159937
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_428 4 65 0.0000161166
Schrenkiella parvula ch7-5 2 CH_spa_301 2 2 0.00078734
Schrenkiella parvula ch3-6 2 CH_spa_302 2 2 0.00078734
Solanum tuberosum ST4.03ch12 2 CH_stu_610 2 2 0.000768679
Trochodendron aralioides group9 2 CH_tar_184 3 4 0.00000259476
Theobroma cacao Chromosome_9 2 CH_tca_401 2 2 0.000439432
Trifolium pratense Tp57577_TGAC_v2_LG3 2 CH_tpr_322 2 2 0.000227092
Vigna mungo CM024069.1 2 CH_vmu_302 2 2 0.000193842
Vitis vinifera chr11 2 CH_vvi_390 2 2 0.000456378

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001