Functional clusters
Information
- Type MapMan
- Description Cytoskeleton organisation.endoplasmic reticulum-cytoskeleton-plasma membrane interface.contact site protein (VAP27)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_4 | 1 | CH_aly_458 | 2 | 2 | 0.000990066 |
| Avicennia marina | ScioBoG_17730_HRSCAF_17811 | 1 | CH_ama_34 | 3 | 3 | 0.00000133821 |
| Coffea canephora | chr8 | 1 | CH_ccan_376 | 2 | 5 | 0.000894346 |
| Cardamine hirsuta | Chr5 | 1 | CH_chi_155 | 3 | 4 | 0.0000010032 |
| Carica papaya | supercontig_49 | 1 | CH_cpa_246 | 3 | 14 | 0.0000985272 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 1 | CH_eca_296 | 3 | 8 | 0.0000483277 |
| Lotus japonicus | chr2 | 1 | CH_lja_158 | 3 | 3 | 0.000000644306 |
| Medicago truncatula | chr4 | 1 | CH_mtr_120 | 6 | 31 | 0.000000000000886104 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 1 | CH_rch_320 | 3 | 3 | 0.000000524459 |
| Salvia bowleyana | GWHASIU00000003 | 1 | CH_sbo_459 | 2 | 2 | 0.00068247 |
| Sequoiadendron giganteum | chr11 | 1 | CH_sgi_1254 | 2 | 2 | 0.000292291 |
| Tripterygium wilfordii | NC_052239.1 | 1 | CH_twi_188 | 3 | 8 | 0.000057378 |
| Arabidopsis lyrata | scaffold_4 | 2 | CH_aly_458 | 2 | 2 | 0.000990066 |
| Avicennia marina | ScioBoG_17730_HRSCAF_17811 | 2 | CH_ama_34 | 3 | 3 | 0.00000133821 |
| Coffea canephora | chr8 | 2 | CH_ccan_376 | 2 | 5 | 0.000894346 |
| Cardamine hirsuta | Chr5 | 2 | CH_chi_155 | 3 | 4 | 0.0000010032 |
| Carica papaya | supercontig_49 | 2 | CH_cpa_246 | 3 | 14 | 0.0000985272 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 2 | CH_eca_296 | 3 | 8 | 0.0000483277 |
| Lotus japonicus | chr2 | 2 | CH_lja_158 | 3 | 3 | 0.000000644306 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 2 | CH_rch_320 | 3 | 3 | 0.000000524459 |
| Salvia bowleyana | GWHASIU00000003 | 2 | CH_sbo_459 | 2 | 2 | 0.00068247 |
| Sequoiadendron giganteum | chr11 | 2 | CH_sgi_1254 | 2 | 2 | 0.000292291 |
| Tripterygium wilfordii | NC_052239.1 | 2 | CH_twi_188 | 3 | 8 | 0.000057378 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |