Functional clusters

Information

  • Type MapMan
  • Description Cytoskeleton organisation.cytoskeleton-plasma membrane-cell wall interface.integrin-like protein (AT14a)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_344 1 CH_aag_144 2 2 0.00024077
Aethionema arabicum LG-1 1 CH_aar_249 2 2 0.000547395
Actinidia chinensis Lachesis_group12 1 CH_ach_278 2 2 0.000814819
Arabidopsis lyrata scaffold_8 1 CH_aly_143 3 3 0.000000548948
Arabidopsis lyrata scaffold_5 1 CH_aly_144 3 3 0.000000548948
Arabidopsis thaliana Chr5 1 CH_ath_175 3 5 0.00000203104
Arabidopsis thaliana Chr3 1 CH_ath_88 5 52 0.00000000604276
Brassica napus A07 1 CH_bna_265 3 3 0.000000795013
Brassica napus C06 1 CH_bna_97 4 5 0.000000000700475
Brassica oleracea C6 1 CH_bol_63 4 8 0.00000000241913
Brassica rapa A07 1 CH_bra_125 3 4 0.00000132688
Beta vulgaris Chr6_EL10_PGA_scaffold0 1 CH_bvu_240 2 2 0.000248375
Camellia sinensis var. sinensis Chr3 1 CH_camsi_781 2 3 0.000412677
Corylus avellana 11 1 CH_cav_374 2 2 0.000230008
Carpinus fangiana Cfa01 1 CH_cfa_252 2 2 0.0000757346
Cardamine hirsuta Chr8 1 CH_chi_380 2 2 0.000414723
Carya illinoinensis Chr01 1 CH_cil_67 5 5 0.00000000000000620034
Chenopodium quinoa C_Quinoa_Scaffold_2646 1 CH_cqu_567 2 2 0.000710732
Chenopodium quinoa C_Quinoa_Scaffold_1000 1 CH_cqu_568 2 2 0.000710732
Capsella rubella scaffold_5 1 CH_cru_20 6 6 8.07057e-17
Capsella rubella scaffold_7 1 CH_cru_81 4 4 0.000000000838499
Eucalyptus grandis Chr08 1 CH_egr_183 7 34 0.0000000000000629231
Eutrema salsugineum scaffold_6 1 CH_esa_293 2 2 0.000456899
Gossypium hirsutum A02 1 CH_ghi_352 3 5 0.00000235236
Gossypium hirsutum D03 1 CH_ghi_353 3 5 0.00000235236
Gossypium raimondii Chr03 1 CH_gra_78 4 5 0.0000000000808926
Lonicera japonica GWHAAZE00000007 1 CH_lonja_100 4 4 0.00000000000966625
Magnolia biondii Chr16 1 CH_mbi_168 3 4 0.000000141515
Olea europaea chr3 1 CH_oeu_115 3 6 0.00000717728
Petunia axillaris Peaxi162Scf00078 1 CH_pax_34 4 5 0.0000000000783584
Populus trichocarpa Chr05 1 CH_ptr_179 3 3 0.000000100229
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_738 2 2 0.000398653
Simmondsia chinensis GWHAASQ00000016 1 CH_sci_188 3 30 0.000176245
Schrenkiella parvula ch2-4 1 CH_spa_267 2 2 0.000472404
Trochodendron aralioides group5 1 CH_tar_118 3 3 0.0000000540676
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_51 4 4 0.0000000000120374
Zea mays 9 1 CH_zma_244 2 3 0.000460162
Anthoceros agrestis Sc2ySwM_344 2 CH_aag_144 2 2 0.00024077
Aethionema arabicum LG-1 2 CH_aar_249 2 2 0.000547395
Actinidia chinensis Lachesis_group12 2 CH_ach_278 2 2 0.000814819
Arabidopsis lyrata scaffold_8 2 CH_aly_143 3 3 0.000000548948
Arabidopsis lyrata scaffold_5 2 CH_aly_144 3 3 0.000000548948
Arabidopsis thaliana Chr5 2 CH_ath_175 3 5 0.00000203104
Arabidopsis thaliana Chr3 2 CH_ath_88 5 52 0.00000000604276
Brassica oleracea C6 2 CH_bol_63 4 8 0.00000000241913
Brassica rapa A07 2 CH_bra_125 3 4 0.00000132688
Beta vulgaris Chr6_EL10_PGA_scaffold0 2 CH_bvu_240 2 2 0.000248375
Camellia sinensis var. sinensis Chr3 2 CH_camsi_781 2 3 0.000412677
Corylus avellana 11 2 CH_cav_374 2 2 0.000230008
Carpinus fangiana Cfa01 2 CH_cfa_252 2 2 0.0000757346
Cardamine hirsuta Chr8 2 CH_chi_380 2 2 0.000414723
Carya illinoinensis Chr01 2 CH_cil_67 5 5 0.00000000000000620034
Chenopodium quinoa C_Quinoa_Scaffold_2646 2 CH_cqu_567 2 2 0.000710732
Chenopodium quinoa C_Quinoa_Scaffold_1000 2 CH_cqu_568 2 2 0.000710732
Capsella rubella scaffold_5 2 CH_cru_20 6 6 8.07057e-17
Capsella rubella scaffold_7 2 CH_cru_81 4 4 0.000000000838499
Eucalyptus grandis Chr08 2 CH_egr_183 7 34 0.0000000000000629231
Eucalyptus grandis Chr07 2 CH_egr_480 5 47 0.00000026749
Eutrema salsugineum scaffold_6 2 CH_esa_293 2 2 0.000456899
Gossypium hirsutum A02 2 CH_ghi_352 3 5 0.00000235236
Gossypium hirsutum D03 2 CH_ghi_353 3 5 0.00000235236
Gossypium raimondii Chr03 2 CH_gra_78 4 5 0.0000000000808926
Lonicera japonica GWHAAZE00000007 2 CH_lonja_100 4 4 0.00000000000966625
Magnolia biondii Chr16 2 CH_mbi_168 3 4 0.000000141515
Olea europaea chr3 2 CH_oeu_115 3 6 0.00000717728
Petunia axillaris Peaxi162Scf00078 2 CH_pax_34 4 5 0.0000000000783584
Populus trichocarpa Chr05 2 CH_ptr_179 3 3 0.000000100229
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_738 2 2 0.000398653
Simmondsia chinensis GWHAASQ00000016 2 CH_sci_188 3 30 0.000176245
Schrenkiella parvula ch2-4 2 CH_spa_267 2 2 0.000472404
Trochodendron aralioides group5 2 CH_tar_118 3 3 0.0000000540676
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_51 4 4 0.0000000000120374
Zea mays 9 2 CH_zma_244 2 3 0.000460162

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001