Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20455 Vaccinium macrocarpon HOM05D002341 ORTHO05D426507 2.0e-225 785.4 383 100.0
FAN14G1989 Fragaria x ananassa HOM05D002341 ORTHO05D003165 7.4e-15 85.9 72 62.5
MELO3C023427.2 Cucumis melo HOM05D002341 ORTHO05D003165 1.8e-13 81.3 133 41.4
CsaV3_7G032320 Cucumis sativus L. HOM05D002341 ORTHO05D003165 1.8e-13 81.3 133 41.4
COL.COLO4_24410 Corchorus olitorius HOM05D002341 ORTHO05D003165 2.4e-13 80.9 126 42.1
HanXRQChr04g0097891 Helianthus annuus HOM05D002341 ORTHO05D003165 2.4e-13 80.9 133 41.4
Atru.chr1.2928 Acer truncatum HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Actinidia15757 Actinidia chinensis HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
ATR0800G142 Amborella trichopoda HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
arahy.Tifrunner.gnm1.ann1.B7D93H Arachis hypogaea HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
arahy.Tifrunner.gnm1.ann1.DCJ864 Arachis hypogaea HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
CSS0044190 Camellia sinensis var. sinensis HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
CANSAT56G2164 Cannabis sativa HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
CiPaw.01G248600 Carya illinoinensis HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Ca_01053_v3 Cicer arietinum L. HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Ca_25291_v3 Cicer arietinum L. HOM05D002341 ORTHO05D034046 3.1e-13 80.5 82 53.7
Duzib160G0553 Durio zibethinus HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Eucgr.F03879 Eucalyptus grandis HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
FvH4_6g29610 Fragaria vesca HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
FvH4_6g43880 Fragaria vesca HOM05D002341 ORTHO05D003165 3.1e-13 80.5 54 68.5
FAN02G2239 Fragaria x ananassa HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
FAN05G4711 Fragaria x ananassa HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
FAN09G3038 Fragaria x ananassa HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
FAN14G4930 Fragaria x ananassa HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Glyma.13G366100 Glycine max HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Glyma.15G007100 Glycine max HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Gohir.A10G073101 Gossypium hirsutum HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Gohir.D10G077825 Gossypium hirsutum HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Gorai.009G127700 Gossypium raimondii HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Gorai.011G084400 Gossypium raimondii HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Hma1.2p1_0017F.1_g011180 Hydrangea macrophylla HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Lj9C499G5 Lonicera japonica HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Lj3g0016754 Lotus japonicus HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Lalb_Chr14g0373851 Lupinus albus HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Lalb_Chr24g0395471 Lupinus albus HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
MD00G1072300 Malus domestica HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
MD17G1212800 Malus domestica HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Manes.04G112400 Manihot esculenta HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Manes.11G057400 Manihot esculenta HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Medtr2g103960 Medicago truncatula HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Nn2g12097 Nelumbo nucifera HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Nn8g39518 Nelumbo nucifera HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Phvul.005G178600 Phaseolus vulgaris HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Psat5g302520 Pisum sativum HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Potri.003G031900 Populus trichocarpa HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Prupe.3G088200 Prunus persica HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
QL05p031390 Quercus lobata HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
RcHm_v2.0_Chr2g0135211 Rosa chinensis HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Sabra03G0018200 Salix brachista HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Thecc.06G025500 Theobroma cacao HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
TPR.G37161 Trifolium pratense HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
TWI75G1620 Tripterygium wilfordii HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
TAR383G0801 Trochodendron aralioides HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
TAR625G0212 Trochodendron aralioides HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
VMungo1080G1733 Vigna mungo HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
GSVIVG01017346001 Vitis vinifera HOM05D002341 ORTHO05D003165 3.1e-13 80.5 82 53.7
Cfa001956 Carpinus fangiana HOM05D002341 ORTHO05D003165 4.1e-13 80.1 82 53.7
Haze_16566 Corylus avellana HOM05D002341 ORTHO05D003165 4.1e-13 80.1 82 53.7
Ciclev10024683m.g Citrus clementina HOM05D002341 ORTHO05D003165 5.3e-13 79.7 82 53.7
Duzib235G1417 Durio zibethinus HOM05D002341 ORTHO05D003165 5.3e-13 79.7 82 52.4
Dinv30610 Davidia involucrata HOM05D002341 ORTHO05D003165 6.9e-13 79.3 82 52.4
Dinv38126 Davidia involucrata HOM05D002341 ORTHO05D003165 6.9e-13 79.3 82 52.4
THA.LOC104800410 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 6.9e-13 79.3 82 52.4
THA.LOC104812513 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 6.9e-13 79.3 82 52.4
ClCG09G002950 Citrullus lanatus HOM05D002341 ORTHO05D003165 9.1e-13 79.0 82 52.4
ECA247G2936 Erigeron canadensis HOM05D002341 ORTHO05D003165 9.1e-13 79.0 82 52.4
Gohir.D05G123700 Gossypium hirsutum HOM05D002341 ORTHO05D003165 9.1e-13 79.0 82 52.4
Lsat_1_v5_gn_1_34320 Lactuca sativa HOM05D002341 ORTHO05D003165 9.1e-13 79.0 82 52.4
Medtr8g011150 Medicago truncatula HOM05D002341 ORTHO05D003165 9.1e-13 79.0 82 51.2
PSO017G1385 Papaver somniferum HOM05D002341 ORTHO05D003165 9.1e-13 79.0 82 52.4
PSO170G3007 Papaver somniferum HOM05D002341 ORTHO05D003165 9.1e-13 79.0 82 52.4
Rhsim08G0212600 Rhododendron simsii HOM05D002341 ORTHO05D003165 9.1e-13 79.0 82 52.4
SHI11229 Sapria himalayana HOM05D002341 ORTHO05D003165 9.1e-13 79.0 133 40.6
Sed0003553 Sechium edule HOM05D002341 ORTHO05D003165 9.1e-13 79.0 82 52.4
Sed0021407 Sechium edule HOM05D002341 ORTHO05D003165 9.1e-13 79.0 82 52.4
vmacro19000 Vaccinium macrocarpon HOM05D002341 ORTHO05D003165 9.1e-13 79.0 82 52.4
Cc00_g08660 Coffea canephora HOM05D002341 ORTHO05D003165 1.2e-12 78.6 82 52.4
Cc01_g01870 Coffea canephora HOM05D002341 ORTHO05D003165 1.2e-12 78.6 81 53.1
CDE02G0999 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 1.5e-12 78.2 82 52.4
CDE09G0407 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 1.5e-12 78.2 82 52.4
COL.COLO4_11940 Corchorus olitorius HOM05D002341 ORTHO05D003165 1.5e-12 78.2 82 52.4
Ah.01g020550 Amaranthus hybridus HOM05D002341 ORTHO05D003165 2.6e-12 77.4 82 50.0
EL10Ac9g21877 Beta vulgaris HOM05D002341 ORTHO05D003165 2.6e-12 77.4 82 50.0
DCAR_025515 Daucus carota HOM05D002341 ORTHO05D003165 2.6e-12 77.4 82 51.2
Ca_14895_v3 Cicer arietinum L. HOM05D002341 ORTHO05D003165 3.4e-12 77.0 82 51.2
PGR102G3099 Punica granatum HOM05D002341 ORTHO05D003165 4.5e-12 76.6 82 51.2
Hund00514 Selenicereus undatus HOM05D002341 ORTHO05D003165 4.5e-12 76.6 82 48.8
Sc10g0008090 Simmondsia chinensis HOM05D002341 ORTHO05D003165 4.5e-12 76.6 82 50.0
MSTRG.4705 Avicennia marina HOM05D002341 ORTHO05D003165 5.9e-12 76.3 133 40.6
MSTRG.9422 Avicennia marina HOM05D002341 ORTHO05D003165 5.9e-12 76.3 133 40.6
Oeu005942.1 Olea europaea HOM05D002341 ORTHO05D003165 5.9e-12 76.3 133 40.6
Oeu045135.1 Olea europaea HOM05D002341 ORTHO05D003165 5.9e-12 76.3 133 40.6
SEGI_03160 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 5.9e-12 76.3 82 51.2
SEGI_15815 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 5.9e-12 76.3 82 51.2
AagrBONN_evm.TU.Sc2ySwM_362.189 Anthoceros agrestis HOM05D002341 ORTHO05D003165 7.7e-12 75.9 82 50.0
AL2G41470 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 7.7e-12 75.9 133 38.3
Carub.0002s2745 Capsella rubella HOM05D002341 ORTHO05D003165 7.7e-12 75.9 133 38.3
AUR62011512 Chenopodium quinoa HOM05D002341 ORTHO05D003165 7.7e-12 75.9 82 48.8
AUR62016331 Chenopodium quinoa HOM05D002341 ORTHO05D003165 7.7e-12 75.9 82 48.8
Mapoly0019s0008 Marchantia polymorpha HOM05D002341 ORTHO05D003165 7.7e-12 75.9 82 50.0
Peaxi162Scf01838g00019 Petunia axillaris HOM05D002341 ORTHO05D003165 7.7e-12 75.9 133 40.6
Pp3c24_20910 Physcomitrium patens HOM05D002341 ORTHO05D003165 7.7e-12 75.9 82 50.0
Pp3c8_25090 Physcomitrium patens HOM05D002341 ORTHO05D003165 7.7e-12 75.9 82 50.0
SGA_v2.0_scaffold26G11346 Striga asiatica HOM05D002341 ORTHO05D003165 1.0e-11 75.5 133 40.6
Thhalv10017992m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 1.3e-11 75.1 82 48.8
Sp5g35830 Schrenkiella parvula HOM05D002341 ORTHO05D003165 1.3e-11 75.1 82 48.8
HPP92_003044 Vanilla planifolia HOM05D002341 ORTHO05D003165 1.3e-11 75.1 82 52.4
SMO145G0262 Selaginella moellendorffii HOM05D002341 ORTHO05D003165 1.7e-11 74.7 82 48.8
Migut.D01080 Erythranthe guttata HOM05D002341 ORTHO05D003165 2.2e-11 74.3 133 39.1
Nitab4.5_0000366g0200 Nicotiana tabacum HOM05D002341 ORTHO05D003165 2.2e-11 74.3 133 39.8
Nitab4.5_0001200g0150 Nicotiana tabacum HOM05D002341 ORTHO05D003165 2.2e-11 74.3 133 39.8
Nitab4.5_0002890g0050 Nicotiana tabacum HOM05D002341 ORTHO05D003165 2.2e-11 74.3 133 39.8
Nitab4.5_0007065g0030 Nicotiana tabacum HOM05D002341 ORTHO05D003165 2.2e-11 74.3 133 39.8
Peaxi162Scf00089g00635 Petunia axillaris HOM05D002341 ORTHO05D003165 2.2e-11 74.3 133 39.8
Solyc07g008880.3 Solanum lycopersicum HOM05D002341 ORTHO05D003165 2.2e-11 74.3 133 39.8
Sopen07g004810 Solanum pennellii HOM05D002341 ORTHO05D003165 2.2e-11 74.3 133 39.8
PGSC0003DMG400028736 Solanum tuberosum HOM05D002341 ORTHO05D003165 2.2e-11 74.3 133 39.8
Eucgr.F03935 Eucalyptus grandis HOM05D002341 ORTHO05D003165 2.9e-11 73.9 82 47.6
Aa31LG3G3350 Aethionema arabicum HOM05D002341 ORTHO05D003165 3.8e-11 73.6 82 47.6
AT1G80070 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 3.8e-11 73.6 82 47.6
BcaB06g28420 Brassica carinata HOM05D002341 ORTHO05D003165 3.8e-11 73.6 82 47.6
BcaB06g28506 Brassica carinata HOM05D002341 ORTHO05D003165 3.8e-11 73.6 82 47.6
BcaC09g51361 Brassica carinata HOM05D002341 ORTHO05D003165 3.8e-11 73.6 82 47.6
BcaNung01746 Brassica carinata HOM05D002341 ORTHO05D003165 3.8e-11 73.6 82 47.6
A01p11740 Brassica napus HOM05D002341 ORTHO05D003165 3.8e-11 73.6 82 47.6
A04p23900 Brassica napus HOM05D002341 ORTHO05D003165 3.8e-11 73.6 82 47.6
C01p13930 Brassica napus HOM05D002341 ORTHO05D003165 3.8e-11 73.6 82 47.6
BolC1t01360H Brassica oleracea HOM05D002341 ORTHO05D003165 3.8e-11 73.6 82 47.6
BolC4t27552H Brassica oleracea HOM05D002341 ORTHO05D003165 3.8e-11 73.6 82 47.6
BraA01t01116Z Brassica rapa HOM05D002341 ORTHO05D003165 3.8e-11 73.6 82 47.6
BraA04t17913Z Brassica rapa HOM05D002341 ORTHO05D003165 3.8e-11 73.6 82 47.6
CARHR074430 Cardamine hirsuta HOM05D002341 ORTHO05D003165 3.8e-11 73.6 82 47.6
CARHR151090 Cardamine hirsuta HOM05D002341 ORTHO05D034046 3.8e-11 73.6 74 50.0
Rhsim13G0186900 Rhododendron simsii HOM05D000379 ORTHO05D000254 3.8e-11 73.6 97 48.5
Zm00001eb375530 Zea mays HOM05D002341 ORTHO05D003165 3.8e-11 73.6 82 50.0
AL7G10650 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 5.0e-11 73.2 82 47.6
Gohir.A05G122801 Gossypium hirsutum HOM05D002341 ORTHO05D003165 5.0e-11 73.2 82 50.0
unitig_747.g21299 Utricularia gibba HOM05D002341 ORTHO05D003165 5.0e-11 73.2 82 50.0
CAN.G147.16 Capsicum annuum HOM05D002341 ORTHO05D003165 6.5e-11 72.8 133 39.1
DCAR_022311 Daucus carota HOM05D002341 ORTHO05D003165 1.1e-10 72.0 82 47.6
Aqoxy3G03781 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 1.4e-10 71.6 82 50.0
TPR.G24585 Trifolium pratense HOM05D002341 ORTHO05D003165 1.4e-10 71.6 82 48.8
Carub.0007s2659 Capsella rubella HOM05D002341 ORTHO05D003165 1.9e-10 71.2 133 37.6
SGA_v2.0_scaffold332G48967 Striga asiatica HOM05D002341 ORTHO05D003165 1.9e-10 71.2 97 46.4
SalBow6G3017 Salvia bowleyana HOM05D002341 ORTHO05D003165 2.5e-10 70.9 82 48.8
SalBow6G5900 Salvia bowleyana HOM05D002341 ORTHO05D003165 2.5e-10 70.9 82 48.8
CARHR222110 Cardamine hirsuta HOM05D002341 ORTHO05D003165 3.2e-10 70.5 82 46.3
Cpa.g.sc67.49 Carica papaya HOM05D002341 ORTHO05D003165 3.2e-10 70.5 125 38.4
Thhalv10024184m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 3.2e-10 70.5 81 45.7
BcaB02g09158 Brassica carinata HOM05D002341 ORTHO05D003165 4.2e-10 70.1 82 45.1
AT4G38780 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 7.2e-10 69.3 82 46.3
FAN05G0659 Fragaria x ananassa HOM05D002341 ORTHO05D003165 7.2e-10 69.3 87 44.8
AL7G40190 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 9.4e-10 68.9 82 46.3
C04p60540 Brassica napus HOM05D002341 ORTHO05D003165 9.4e-10 68.9 125 37.6
Aqoxy3G02657 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 1.6e-09 68.2 82 46.3
Haze_26409 Corylus avellana HOM05D002341 ORTHO05D003165 1.6e-09 68.2 129 34.1
Prupe.3G223400 Prunus persica HOM05D002341 ORTHO05D003165 1.6e-09 68.2 97 44.3
MCO02G483 Micromonas commoda HOM05D002341 ORTHO05D003165 2.1e-09 67.8 82 45.1
RcHm_v2.0_Chr2g0160631 Rosa chinensis HOM05D002341 ORTHO05D003165 2.1e-09 67.8 82 47.6
Cre01.g016050 Chlamydomonas reinhardtii HOM05D002341 ORTHO05D003165 2.7e-09 67.4 82 43.9
Medtr2g093510 Medicago truncatula HOM05D002341 ORTHO05D003165 2.7e-09 67.4 121 38.8
C04p08780 Brassica napus HOM05D002341 ORTHO05D003165 6.1e-09 66.2 82 42.7
BolC4t22470H Brassica oleracea HOM05D002341 ORTHO05D003165 6.1e-09 66.2 82 42.7
BcaC02g12021 Brassica carinata HOM05D002341 ORTHO05D003165 7.9e-09 65.9 125 36.0
A05p07330 Brassica napus HOM05D002341 ORTHO05D003165 7.9e-09 65.9 125 36.0
BraA05t19698Z Brassica rapa HOM05D002341 ORTHO05D003165 7.9e-09 65.9 125 36.0
CBR_g48660 Chara braunii HOM05D002341 ORTHO05D003165 1.4e-08 65.1 82 42.7
BolC5t32700H Brassica oleracea HOM05D002341 ORTHO05D003165 1.8e-08 64.7 146 32.2
HanXRQChr02g0033481 Helianthus annuus HOM05D002341 ORTHO05D003165 1.8e-08 64.7 111 38.7
ECA246G5065 Erigeron canadensis HOM05D002341 ORTHO05D003165 3.9e-08 63.5 82 45.1
Phvul.004G096300 Phaseolus vulgaris HOM05D002341 ORTHO05D018003 3.9e-08 63.5 131 34.4
BcaC05g27955 Brassica carinata HOM05D002341 ORTHO05D003165 1.1e-07 62.0 82 41.5
C05p39600 Brassica napus HOM05D002341 ORTHO05D003165 1.1e-07 62.0 82 41.5
PRCOL_00001855 Prasinoderma coloniale HOM05D002341 ORTHO05D003165 2.6e-07 60.8 121 35.5
Phvul.005G086200 Phaseolus vulgaris HOM05D002341 ORTHO05D018003 5.7e-07 59.7 99 41.4
Dinv30609 Davidia involucrata HOM05D002341 ORTHO05D003165 2.8e-06 57.4 43 65.1
Cfa023699 Carpinus fangiana HOM05D002341 ORTHO05D003165 3.7e-06 57.0 80 37.5


User provided reference genes

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