Gene: SGA_v2.0_scaffold332G48967

General Information

Structural Information

  • Species Striga asiatica
  • Gene Identifier SGA_v2.0_scaffold332G48967
  • Transcript Identifier SGA_v2.0_scaffold332T48967
  • Gene Type Coding gene
  • Location scaffold332 : 278104-283926 : negative

Gene Family Information

  • ID HOM05D002341
  • #Genes/#Species 290/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

Descriptions

  • product Pre-mRNA-processing-splicing factor 8
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0030623
IEA
InterProU5 snRNA binding
GO:0017070
ISO
PLAZA Homology (enrichment)U6 snRNA binding HOM05D002341
GO:0005515
ISO
PLAZA Homology (enrichment)protein binding HOM05D002341
GO:0070122
ISO
PLAZA Homology (enrichment)isopeptidase activity HOM05D002341
GO:0008237
ISO
PLAZA Homology (enrichment)metallopeptidase activity HOM05D002341

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
InterProspliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027652 Pre-mRNA-processing-splicing factor 8
IPR012337 Ribonuclease H-like superfamily
IPR019582 RNA recognition motif, spliceosomal PrP8
IPR012591 PRO8NT domain
IPR019581 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding
IPR012592 PROCN domain
IPR042516 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily
Mapman id Description
35.1 not assigned.annotated