Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g038010.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 1.1e-110 403.3 198 100.0
PGSC0003DMG400026878 Solanum tuberosum HOM05D003938 ORTHO05D004759 1.0e-52 210.7 190 62.1
Solyc12g049430.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 1.3e-50 203.8 210 55.7
Sopen02g012840 Solanum pennellii HOM05D003938 ORTHO05D004759 2.8e-50 202.6 187 59.9
Sopen12g031080 Solanum pennellii HOM05D003938 ORTHO05D004759 1.4e-49 200.3 187 61.0
PGSC0003DMG400021758 Solanum tuberosum HOM05D003938 ORTHO05D004759 1.0e-44 184.1 178 58.4
Lj8A187T28 Lonicera japonica HOM05D003938 ORTHO05D004759 1.5e-43 180.3 189 52.9
Phvul.011G177175 Phaseolus vulgaris HOM05D003938 ORTHO05D004759 2.5e-43 179.5 189 52.4
Glyma.15G213200 Glycine max HOM05D003938 ORTHO05D004759 4.3e-43 178.7 189 52.4
Lsat_1_v5_gn_7_71321 Lactuca sativa HOM05D003938 ORTHO05D004759 4.3e-43 178.7 189 53.4
Glyma.19G004200 Glycine max HOM05D003938 ORTHO05D004759 7.4e-43 177.9 189 52.4
Aa31LG10G170 Aethionema arabicum HOM05D003938 ORTHO05D004759 1.3e-42 177.2 189 54.5
CSS0007376 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 1.3e-42 177.2 180 54.4
DCAR_013743 Daucus carota HOM05D003938 ORTHO05D004759 1.3e-42 177.2 189 52.4
MELO3C012622.2 Cucumis melo HOM05D003938 ORTHO05D004759 1.7e-42 176.8 189 52.4
CsaV3_7G022770 Cucumis sativus L. HOM05D003938 ORTHO05D004759 1.7e-42 176.8 189 52.4
Thecc.09G180900 Theobroma cacao HOM05D003938 ORTHO05D004759 2.2e-42 176.4 189 51.9
Sp1g38950 Schrenkiella parvula HOM05D003938 ORTHO05D004759 8.2e-42 174.5 189 52.4
CSS0000259 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 1.4e-41 173.7 189 51.9
CSS0019207 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 1.4e-41 173.7 189 51.9
Sed0018665 Sechium edule HOM05D003938 ORTHO05D004759 1.4e-41 173.7 189 51.3
GSVIVG01020281001 Vitis vinifera HOM05D003938 ORTHO05D004759 1.4e-41 173.7 189 51.9
Solyc07g066420.4 Solanum lycopersicum HOM05D003938 ORTHO05D004759 2.4e-41 172.9 189 51.9
Eucgr.F01467 Eucalyptus grandis HOM05D003938 ORTHO05D004759 3.1e-41 172.6 189 51.3
Prupe.4G137900 Prunus persica HOM05D003938 ORTHO05D004759 3.1e-41 172.6 189 52.4
MSTRG.16112 Avicennia marina HOM05D003938 ORTHO05D004759 4.1e-41 172.2 189 51.3
Peaxi162Scf00452g00848 Petunia axillaris HOM05D003938 ORTHO05D004759 4.1e-41 172.2 204 50.5
Migut.M01560 Erythranthe guttata HOM05D003938 ORTHO05D004759 5.3e-41 171.8 189 50.3
Cc05_g16030 Coffea canephora HOM05D003938 ORTHO05D004759 6.9e-41 171.4 189 50.8
Duzib168G1061 Durio zibethinus HOM05D003938 ORTHO05D004759 6.9e-41 171.4 189 50.8
Thhalv10011414m.g Eutrema salsugineum HOM05D003938 ORTHO05D004759 6.9e-41 171.4 189 52.4
Medtr8g442420 Medicago truncatula HOM05D003938 ORTHO05D004759 6.9e-41 171.4 189 51.3
THA.LOC104822756 Tarenaya hassleriana HOM05D003938 ORTHO05D004759 9.1e-41 171.0 189 51.3
Gohir.D05G003701 Gossypium hirsutum HOM05D003938 ORTHO05D004759 1.5e-40 170.2 189 50.3
Lj3g0013935 Lotus japonicus HOM05D003938 ORTHO05D004759 2.0e-40 169.9 189 51.3
Lalb_Chr01g0007211 Lupinus albus HOM05D003938 ORTHO05D004759 2.0e-40 169.9 189 51.3
MD05G1222400 Malus domestica HOM05D003938 ORTHO05D004759 2.0e-40 169.9 189 51.3
Potri.005G097500 Populus trichocarpa HOM05D003938 ORTHO05D004759 2.6e-40 169.5 189 50.8
Actinidia07348 Actinidia chinensis HOM05D003938 ORTHO05D004759 4.5e-40 168.7 189 49.7
AL1G62420 Arabidopsis lyrata HOM05D003938 ORTHO05D004759 4.5e-40 168.7 189 51.9
arahy.Tifrunner.gnm1.ann1.TD7I6F Arachis hypogaea HOM05D003938 ORTHO05D004759 4.5e-40 168.7 189 51.3
Carub.0008s0543 Capsella rubella HOM05D003938 ORTHO05D004759 4.5e-40 168.7 189 51.9
Gohir.A05G003300 Gossypium hirsutum HOM05D003938 ORTHO05D004759 5.9e-40 168.3 189 50.3
MD10G1204000 Malus domestica HOM05D003938 ORTHO05D004759 5.9e-40 168.3 189 50.3
Manes.06G173850 Manihot esculenta HOM05D003938 ORTHO05D004759 5.9e-40 168.3 189 49.7
PSO717G0129 Papaver somniferum HOM05D003938 ORTHO05D004759 5.9e-40 168.3 189 51.3
AUR62037621 Chenopodium quinoa HOM05D003938 ORTHO05D004759 7.7e-40 167.9 189 50.8
Gorai.009G003300 Gossypium raimondii HOM05D003938 ORTHO05D004759 7.7e-40 167.9 189 49.7
QL04p077115 Quercus lobata HOM05D003938 ORTHO05D004759 7.7e-40 167.9 189 51.3
Cpa.g.sc331.3 Carica papaya HOM05D003938 ORTHO05D004759 1.3e-39 167.2 189 49.2
vmacro11660 Vaccinium macrocarpon HOM05D003938 ORTHO05D004759 1.3e-39 167.2 189 49.2
PSO675G9176 Papaver somniferum HOM05D003938 ORTHO05D004759 1.7e-39 166.8 189 51.3
RcHm_v2.0_Chr5g0026161 Rosa chinensis HOM05D003938 ORTHO05D004759 2.2e-39 166.4 189 50.8
Carub.0001s4300 Capsella rubella HOM05D003938 ORTHO05D004759 3.8e-39 165.6 189 50.8
Sopen07g034590 Solanum pennellii HOM05D003938 ORTHO05D004759 3.8e-39 165.6 189 50.8
arahy.Tifrunner.gnm1.ann1.KA488U Arachis hypogaea HOM05D003938 ORTHO05D004759 5.0e-39 165.2 189 50.3
Ciclev10004604m.g Citrus clementina HOM05D003938 ORTHO05D004759 5.0e-39 165.2 189 48.7
Nn7g37935 Nelumbo nucifera HOM05D003938 ORTHO05D004759 5.0e-39 165.2 189 50.3
EL10Ac2g03350 Beta vulgaris HOM05D003938 ORTHO05D004759 6.5e-39 164.9 189 48.7
PGSC0003DMG400004370 Solanum tuberosum HOM05D003938 ORTHO05D004759 6.5e-39 164.9 107 79.4
SGA_v2.0_scaffold7G03579 Striga asiatica HOM05D003938 ORTHO05D004759 8.5e-39 164.5 198 48.5
Aqoxy3G04185_Aqoxy3G04186 Aquilegia oxysepala HOM05D003938 ORTHO05D004759 1.1e-38 164.1 189 49.7
CDE01G0219 Ceratophyllum demersum HOM05D003938 ORTHO05D004759 1.1e-38 164.1 189 50.8
Sabra05G0079800 Salix brachista HOM05D003938 ORTHO05D004759 1.1e-38 164.1 189 49.7
AUR62040863 Chenopodium quinoa HOM05D003938 ORTHO05D004759 3.2e-38 162.5 189 49.7
FvH4_3g15530 Fragaria vesca HOM05D003938 ORTHO05D004759 3.2e-38 162.5 189 49.7
FAN11G2591 Fragaria x ananassa HOM05D003938 ORTHO05D004759 3.2e-38 162.5 189 49.7
FAN21G1947 Fragaria x ananassa HOM05D003938 ORTHO05D004759 3.2e-38 162.5 189 49.7
CSS0016392 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 5.5e-38 161.8 189 48.7
CSS0024659 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 5.5e-38 161.8 189 48.7
CARHR044020 Cardamine hirsuta HOM05D003938 ORTHO05D004759 5.5e-38 161.8 189 50.3
Os06g0670500 Oryza sativa ssp. japonica HOM05D003938 ORTHO05D004759 5.5e-38 161.8 188 48.9
unitig_26.g10081 Utricularia gibba HOM05D003938 ORTHO05D004759 5.5e-38 161.8 189 48.7
FAN25G2080 Fragaria x ananassa HOM05D003938 ORTHO05D004759 1.6e-37 160.2 189 49.2
VMungo1127G1769 Vigna mungo HOM05D003938 ORTHO05D004759 1.6e-37 160.2 189 48.1
ClCG09G022610 Citrullus lanatus HOM05D003938 ORTHO05D004759 2.1e-37 159.8 182 50.5
Sc09g0007280 Simmondsia chinensis HOM05D003938 ORTHO05D004759 2.1e-37 159.8 189 50.8
BraA08t32068Z Brassica rapa HOM05D003938 ORTHO05D008065 7.9e-37 157.9 189 48.7
Solyc02g061800.2 Solanum lycopersicum HOM05D003938 ORTHO05D004759 1.0e-36 157.5 185 51.4
Zm00001eb274050 Zea mays HOM05D003938 ORTHO05D004759 1.0e-36 157.5 188 47.9
CAN.G943.34 Capsicum annuum HOM05D003938 ORTHO05D004759 1.8e-36 156.8 189 48.7
Nitab4.5_0001749g0120 Nicotiana tabacum HOM05D003938 ORTHO05D004759 1.8e-36 156.8 189 48.7
Nitab4.5_0009317g0010 Nicotiana tabacum HOM05D003938 ORTHO05D004759 2.3e-36 156.4 189 48.7
TWI74G0164 Tripterygium wilfordii HOM05D003938 ORTHO05D004759 2.3e-36 156.4 189 47.1
Solyc12g038150.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 1.1e-35 154.1 193 50.8
AT1G53720 Arabidopsis thaliana HOM05D003938 ORTHO05D004759 2.0e-35 153.3 189 48.1
ECA240G3729 Erigeron canadensis HOM05D003938 ORTHO05D004759 2.0e-35 153.3 189 47.6
Os06g0670400 Oryza sativa ssp. japonica HOM05D003938 ORTHO05D004759 2.6e-35 152.9 196 44.9
BolC3t21636H Brassica oleracea HOM05D003938 ORTHO05D008065 3.3e-35 152.5 189 47.6
BcaB04g16924 Brassica carinata HOM05D003938 ORTHO05D004759 5.7e-35 151.8 189 47.6
C03p93390 Brassica napus HOM05D003938 ORTHO05D008065 7.4e-35 151.4 189 47.6
SMO351G0536 Selaginella moellendorffii HOM05D003938 ORTHO05D004759 7.4e-35 151.4 189 49.2
Haze_07842 Corylus avellana HOM05D003938 ORTHO05D004759 2.8e-34 149.4 189 47.1
PGR119G1566 Punica granatum HOM05D003938 ORTHO05D004759 3.7e-34 149.1 189 47.1
TAR626G0088 Trochodendron aralioides HOM05D003938 ORTHO05D004759 8.2e-34 147.9 234 41.0
CiPaw.01G119900 Carya illinoinensis HOM05D003938 ORTHO05D004759 1.4e-33 147.1 189 46.6
Lj2g0001970 Lotus japonicus HOM05D003938 ORTHO05D004759 1.4e-33 147.1 174 48.3
AagrBONN_evm.TU.Sc2ySwM_368.1871 Anthoceros agrestis HOM05D003938 ORTHO05D004759 1.8e-33 146.7 188 44.7
Pp3c1_5600 Physcomitrium patens HOM05D003938 ORTHO05D004759 3.1e-33 146.0 171 47.4
Sopen12g023920 Solanum pennellii HOM05D003938 ORTHO05D004759 4.1e-33 145.6 186 48.9
Mapoly0010s0175 Marchantia polymorpha HOM05D003938 ORTHO05D004759 7.0e-33 144.8 188 45.7
HPP92_008853 Vanilla planifolia HOM05D003938 ORTHO05D004759 9.1e-33 144.4 190 44.7
HPP92_008859 Vanilla planifolia HOM05D003938 ORTHO05D004759 9.1e-33 144.4 190 44.7
HanXRQChr05g0160881 Helianthus annuus HOM05D003938 ORTHO05D004759 1.2e-32 144.1 189 45.0
MBI01_g43617_MAGBIO Magnolia biondii HOM05D003938 ORTHO05D004759 2.6e-32 142.9 172 48.8
EL10Ac6g14412 Beta vulgaris HOM05D003938 ORTHO05D004759 7.7e-32 141.4 190 46.3
CANSAT80G1380 Cannabis sativa HOM05D003938 ORTHO05D004759 1.7e-31 140.2 189 43.9
ATR0763G204 Amborella trichopoda HOM05D003938 ORTHO05D004759 6.5e-31 138.3 172 45.9
Medtr6g084140 Medicago truncatula HOM05D003938 ORTHO05D004759 1.9e-30 136.7 189 44.4
TPR.G22448 Trifolium pratense HOM05D003938 ORTHO05D004759 5.5e-30 135.2 189 43.9
Atru.chr1.189 Acer truncatum HOM05D003938 ORTHO05D004759 6.1e-29 131.7 156 46.8
Dinv19621 Davidia involucrata HOM05D003938 ORTHO05D004759 1.0e-28 131.0 113 61.1
Eucgr.F01469 Eucalyptus grandis HOM05D003938 ORTHO05D004759 3.0e-28 129.4 145 47.6
Sopen12g017810 Solanum pennellii HOM05D003308 ORTHO05D000977 6.7e-28 128.3 82 78.0
THA.LOC104822789 Tarenaya hassleriana HOM05D003938 ORTHO05D004759 2.0e-27 126.7 113 59.3
AL1G53090 Arabidopsis lyrata HOM05D000070 ORTHO05D004759 7.5e-27 124.8 185 44.3
MCO01G120 Micromonas commoda HOM05D003938 ORTHO05D004759 8.2e-26 121.3 194 40.7
FAN16G1651 Fragaria x ananassa HOM05D003938 ORTHO05D004759 3.5e-24 115.9 113 55.8
Haze_10874 Corylus avellana HOM05D003938 ORTHO05D004759 1.3e-23 114.0 164 43.9
Ca_12645_v3 Cicer arietinum L. HOM05D003938 ORTHO05D004759 3.8e-23 112.5 241 33.6
Cre11.g479850 Chlamydomonas reinhardtii HOM05D003938 ORTHO05D004759 5.0e-23 112.1 186 38.7
A08p00110 Brassica napus HOM05D000173 ORTHO05D008065 8.5e-23 111.3 113 53.1
SHI21595 Sapria himalayana HOM05D000002 ORTHO05D004759 2.5e-22 109.8 137 45.3
TPR.G9407 Trifolium pratense HOM05D003938 ORTHO05D004759 4.7e-21 105.5 170 42.9
Psat4g174080 Pisum sativum HOM05D003938 ORTHO05D004759 8.0e-21 104.8 138 42.8
AL1G64340 Arabidopsis lyrata HOM05D003938 ORTHO05D004759 3.0e-20 102.8 193 39.4
TPR.G24716 Trifolium pratense HOM05D003938 ORTHO05D004759 6.8e-20 101.7 173 41.0
AagrBONN_evm.TU.Sc2ySwM_344.2630 Anthoceros agrestis HOM05D003938 ORTHO05D004759 9.8e-19 97.8 182 35.2
Ciclev10007155m.g Citrus clementina HOM05D003938 ORTHO05D004759 9.8e-19 97.8 182 37.9
Nitab4.5_0004242g0030 Nicotiana tabacum HOM05D003938 ORTHO05D004759 1.0e-15 87.8 187 34.2
Haze_26935 Corylus avellana HOM05D003938 ORTHO05D004759 8.5e-15 84.7 208 28.8
Oeu003830.4 Olea europaea HOM05D003938 ORTHO05D004759 2.5e-14 83.2 102 45.1
SMO353G0235 Selaginella moellendorffii HOM05D003938 ORTHO05D004759 3.2e-14 82.8 180 34.4
Solyc12g038070.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 7.2e-14 81.6 55 72.7
Solyc12g038120.3 Solanum lycopersicum HOM05D003938 ORTHO05D004759 1.6e-13 80.5 63 68.3
SEGI_08656 Sequoiadendron giganteum HOM05D003938 ORTHO05D004759 4.4e-11 72.4 62 56.5
AT1G53780 Arabidopsis thaliana HOM05D000070 ORTHO05D003301 1.8e-09 67.0 87 46.0
Sopen12g017720 Solanum pennellii HOM05D000006 ORTHO05D000001 3.1e-09 66.2 42 76.2
CBR_g2919 Chara braunii HOM05D003938 ORTHO05D004759 2.0e-08 63.5 112 35.7
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 2.0e-08 63.5 165 30.9
CBR_g2920 Chara braunii HOM05D003938 ORTHO05D004759 5.9e-08 62.0 86 44.2
Solyc12g089200.3 Solanum lycopersicum HOM05D003938 ORTHO05D004759 1.1e-06 57.8 48 62.5
ECA248G1281 Erigeron canadensis HOM05D003938 ORTHO05D004759 5.6e-06 55.5 66 51.5
PGSC0003DMG400004369 Solanum tuberosum HOM05D003938 ORTHO05D004759 7.3e-06 55.1 72 54.2


User provided reference genes

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