Gene: Carub.0001s4300

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0001s4300
  • Transcript Identifier Carub.0001s4300.1
  • Gene Type Coding gene
  • Location scaffold_1 : 18901815-18904357 : positive

Gene Family Information

  • ID HOM05D003938
  • #Genes/#Species 177/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0001s4300.v1.1
  • pacid 39229780
  • synonym Carubv10011748m.g

Descriptions

  • Description K12735 - peptidyl-prolyl cis-trans isomerase-like 4 [EC:5.2.1.8] (PPIL4)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000413
IEA
InterProprotein peptidyl-prolyl isomerization

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003755
IEA
InterPropeptidyl-prolyl cis-trans isomerase activity
GO:0008270
IEA
InterProzinc ion binding
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT1G53720
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G53720

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G53720
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G53720

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035538 PPIL4-like, cyclophilin domain
IPR000504 RNA recognition motif domain
IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain
IPR035979 RNA-binding domain superfamily
IPR029000 Cyclophilin-like domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR001878 Zinc finger, CCHC-type
IPR035542 Cyclophilin-RNA interacting protein
Mapman id Description
50.5.2 Enzyme classification.EC_5 isomerases.EC_5.2 cis-trans-isomerase