Gene: Pp3c1_5600
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c1_5600
- Transcript Identifier Pp3c1_5600V3.2
- Gene Type Coding gene
- Location Chr01 : 4236991-4241518 : negative
Gene Family Information
- ID HOM05D003938
- #Genes/#Species 177/93
- Phylogenetic origin
- ID ORTHO05D004759
- #Genes/#Species 172/91
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name Pp3c1_5600V3.2
- pacid 32970635
- alias Phypa_123572
- alias Pp1s45_218V6
- alias Phpat.001G021700
- uniprot A0A2K1L6Z2
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000413 | IEA | GOA Database | protein peptidyl-prolyl isomerization | |
| GO:0000413 | IEA | InterPro | protein peptidyl-prolyl isomerization | |
| GO:1901407 | IBA | GOA Database | regulation of phosphorylation of RNA polymerase II C-terminal domain |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008270 | IEA | GOA Database | zinc ion binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0003755 | IEA | GOA Database | peptidyl-prolyl cis-trans isomerase activity | |
| GO:0003755 | IEA | InterPro | peptidyl-prolyl cis-trans isomerase activity | |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0016853 | IEA | GOA Database | isomerase activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G53720 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IBA IEA | GOA Database | nucleus | |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G53720 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR036875 | Zinc finger, CCHC-type superfamily |
| IPR000504 | RNA recognition motif domain |
| IPR001878 | Zinc finger, CCHC-type |
| IPR029000 | Cyclophilin-like domain superfamily |
| IPR035979 | RNA-binding domain superfamily |
| IPR035542 | Cyclophilin-RNA interacting protein |
| IPR035538 | PPIL4-like, cyclophilin domain |
| IPR002130 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain |
| Mapman id | Description |
|---|---|
| 50.5.2 | Enzyme classification.EC_5 isomerases.EC_5.2 cis-trans-isomerase |