Gene: Sopen07g034590

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen07g034590
  • Transcript Identifier Sopen07g034590.1
  • Gene Type Coding gene
  • Location Spenn-ch07 : 79087656-79097243 : positive

Gene Family Information

  • ID HOM05D003938
  • #Genes/#Species 177/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen07g034590.1

Descriptions

  • Description Encodes a cyclophilin, member of a family modular proteins consisting of a peptidyl-prolyl cisñ trans isomerase (PPIase) domain, followed by an RNA recognition motif (RRM), and a C-terminal domain enriched in charged amino acids. Interacts with with SCL33/SR33 and with a majority of Arabidopsis SR proteins and the largest subunit of RNA polymerase II. Localizes to the nucleus, but it does not significantly colocalize with SR proteins in nuclear speckles. | cyclophilin 59 (CYP59) | FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity, RNA binding, nucleic acid binding | INVOLVED IN: protein folding | LOCATED IN: nucleus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Cyclophilin-like , Peptidyl-prolyl cis-trans isomerase, cyclophilin-type , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , Zinc finger, CCHC-type | BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerases, hydrolases, nucleoside-triphosphatases, ATP binding, nucleotide binding, ATPases
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000413
IEA
InterProprotein peptidyl-prolyl isomerization

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003755
IEA
InterPropeptidyl-prolyl cis-trans isomerase activity
GO:0008270
IEA
InterProzinc ion binding
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT1G53720
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G53720

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G53720
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G53720

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR029000 Cyclophilin-like domain superfamily
IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain
IPR001878 Zinc finger, CCHC-type
IPR035538 PPIL4-like, cyclophilin domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035542 Cyclophilin-RNA interacting protein
IPR035979 RNA-binding domain superfamily
Mapman id Description
18.13.1 Protein modification.protein folding.protein folding catalyst (Cyclophilin)