Gene: Lj2g0001970
General Information
Structural Information
- Species Lotus japonicus
- Gene Identifier Lj2g0001970
- Transcript Identifier Lj2g0001970.1
- Gene Type Coding gene
- Location chr2 : 82890172-82900563 : negative
Gene Family Information
- ID HOM05D003938
- #Genes/#Species 177/93
- Phylogenetic origin
- ID ORTHO05D004759
- #Genes/#Species 172/91
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Lj2g0001970.Lj1.0v1
- pacid 44928878
Descriptions
- Description PF00076//PF00160//PF03004 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (Pro_isomerase) // Plant transposase (Ptta/En/Spm family) (Transposase_24)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000413 | IEA | InterPro | protein peptidyl-prolyl isomerization |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003755 | IEA | InterPro | peptidyl-prolyl cis-trans isomerase activity | |
| GO:0008270 | ISO | PLAZA Homology (enrichment) | zinc ion binding | HOM05D003938 |
| GO:0003723 | ISO | PLAZA Integrative Orthology | RNA binding | AT1G53720 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G53720 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G53720 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G53720 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR035542 | Cyclophilin-RNA interacting protein |
| IPR035979 | RNA-binding domain superfamily |
| IPR000504 | RNA recognition motif domain |
| IPR002130 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain |
| IPR004252 | Probable transposase, Ptta/En/Spm, plant |
| IPR029000 | Cyclophilin-like domain superfamily |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |