Gene: AT1G53720

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G53720
  • Transcript Identifier AT1G53720.1
  • Gene Type Coding gene
  • Location Chr1 : 20057012-20059508 : positive

Gene Family Information

  • ID HOM05D003938
  • #Genes/#Species 177/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G53720.1
  • symbol CYP59
  • Alias ATCYP59,CYCLOPHILIN 59
  • uniprot Q6Q151

Descriptions

  • Description cyclophilin 59
  • Computational description cyclophilin 59 (CYP59); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity, RNA binding, nucleic acid binding; INVOLVED IN: protein folding; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (TAIR:AT1G53780.2); Has 61647 Blast hits to 39757 proteins in 2942 species: Archae - 163; Bacteria - 9741; Metazoa - 25019; Fungi - 7217; Plants - 5688; Viruses - 226; Other Eukaryotes - 13593 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000413
IEA
Gene Ontologyprotein peptidyl-prolyl isomerization
GO:0000413
IEA
InterProprotein peptidyl-prolyl isomerization
GO:1901407
IBA
Gene Ontologyregulation of phosphorylation of RNA polymerase II C-terminal domain1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003755
IEA
Gene Ontologypeptidyl-prolyl cis-trans isomerase activity
GO:0003755
IEA
InterPropeptidyl-prolyl cis-trans isomerase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IDA
Gene OntologyRNA binding2
GO:0016853
IEA
GOA Databaseisomerase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus1 2
GO:0005829
IDA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain
IPR001878 Zinc finger, CCHC-type
IPR035542 Cyclophilin-RNA interacting protein
IPR035538 PPIL4-like, cyclophilin domain
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
IPR029000 Cyclophilin-like domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
50.5.2 Enzyme classification.EC_5 isomerases.EC_5.2 cis-trans-isomerase