Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0275851 Rosa chinensis HOM05D002640 ORTHO05D003231 3.9e-207 724.5 360 100.0
MD00G1108000 Malus domestica HOM05D002640 ORTHO05D003231 2.5e-57 226.9 286 49.0
FvH4_1g29220 Fragaria vesca HOM05D002640 ORTHO05D003231 2.4e-55 220.3 286 45.8
FAN26G3239 Fragaria x ananassa HOM05D002640 ORTHO05D003231 9.0e-55 218.4 286 45.5
RcHm_v2.0_Chr3g0494601 Rosa chinensis HOM05D002640 ORTHO05D003231 9.0e-55 218.4 286 45.5
Prupe.7G019900 Prunus persica HOM05D002640 ORTHO05D003231 2.6e-54 216.9 290 46.2
FAN28G1238 Fragaria x ananassa HOM05D002640 ORTHO05D003231 4.5e-54 216.1 286 45.1
FAN19G2288 Fragaria x ananassa HOM05D002640 ORTHO05D003231 5.8e-54 215.7 286 45.1
FAN23G1939 Fragaria x ananassa HOM05D002640 ORTHO05D003231 1.0e-53 214.9 286 44.8
QL07p013828 Quercus lobata HOM05D002640 ORTHO05D003231 1.3e-53 214.5 297 46.1
RcHm_v2.0_Chr6g0275861 Rosa chinensis HOM05D002640 ORTHO05D003231 1.4e-52 211.1 124 87.9
CSS0028254 Camellia sinensis var. sinensis HOM05D002640 ORTHO05D003231 2.7e-51 206.8 298 44.3
Gorai.010G212900 Gossypium raimondii HOM05D002640 ORTHO05D003231 3.5e-51 206.5 274 45.6
Haze_20287 Corylus avellana HOM05D002640 ORTHO05D003231 4.6e-51 206.1 297 44.8
Gohir.D06G181500 Gossypium hirsutum HOM05D002640 ORTHO05D003231 4.6e-51 206.1 274 46.0
Sabra06G0021300 Salix brachista HOM05D002640 ORTHO05D003231 1.3e-50 204.5 272 45.6
MD10G1173400 Malus domestica HOM05D002640 ORTHO05D003231 1.8e-50 204.1 295 44.1
GSVIVG01025815001 Vitis vinifera HOM05D002640 ORTHO05D003231 3.0e-50 203.4 295 44.7
Potri.016G029200 Populus trichocarpa HOM05D002640 ORTHO05D003231 5.1e-50 202.6 272 44.9
Gohir.A06G172600 Gossypium hirsutum HOM05D002640 ORTHO05D003231 8.7e-50 201.8 274 45.3
Potri.006G031900 Populus trichocarpa HOM05D002640 ORTHO05D003231 8.7e-50 201.8 288 44.1
Gohir.A10G191700 Gossypium hirsutum HOM05D002640 ORTHO05D003231 1.5e-49 201.1 289 43.9
Dinv10811 Davidia involucrata HOM05D002640 ORTHO05D003231 2.5e-49 200.3 297 43.4
Gorai.011G223600 Gossypium raimondii HOM05D002640 ORTHO05D003231 2.5e-49 200.3 289 43.9
Actinidia38202 Actinidia chinensis HOM05D002640 ORTHO05D003231 3.3e-49 199.9 299 42.1
Gohir.D10G199500 Gossypium hirsutum HOM05D002640 ORTHO05D003231 3.3e-49 199.9 289 43.9
CiPaw.09G052100 Carya illinoinensis HOM05D002640 ORTHO05D003231 4.3e-49 199.5 298 43.6
QL07p013799 Quercus lobata HOM05D002640 ORTHO05D003231 5.7e-49 199.1 301 44.2
Glyma.03G121000 Glycine max HOM05D002640 ORTHO05D003231 7.4e-49 198.7 296 44.6
Thecc.10G133700 Theobroma cacao HOM05D002640 ORTHO05D003231 1.3e-48 198.0 289 43.3
Sabra16G0033200 Salix brachista HOM05D002640 ORTHO05D003231 1.6e-48 197.6 272 44.9
HanXRQChr04g0125591 Helianthus annuus HOM05D002640 ORTHO05D003231 2.1e-48 197.2 291 44.3
CANSAT64G1505 Cannabis sativa HOM05D002640 ORTHO05D003231 3.7e-48 196.4 287 44.9
Phvul.001G117200 Phaseolus vulgaris HOM05D002640 ORTHO05D003231 6.3e-48 195.7 292 43.5
Rhsim04G0118000 Rhododendron simsii HOM05D002640 ORTHO05D003231 6.3e-48 195.7 281 42.7
arahy.Tifrunner.gnm1.ann1.FM1LAN Arachis hypogaea HOM05D002640 ORTHO05D003231 1.1e-47 194.9 294 42.5
arahy.Tifrunner.gnm1.ann1.PY7FNU Arachis hypogaea HOM05D002640 ORTHO05D003231 1.1e-47 194.9 294 42.5
Cc06_g21410 Coffea canephora HOM05D002640 ORTHO05D003231 1.4e-47 194.5 295 42.0
Sed0027584 Sechium edule HOM05D002640 ORTHO05D003231 1.8e-47 194.1 293 45.7
Glyma.19G125600 Glycine max HOM05D002640 ORTHO05D003231 2.4e-47 193.7 296 43.6
Atru.chr1.1380 Acer truncatum HOM05D002640 ORTHO05D003231 4.1e-47 193.0 297 42.8
Lj1g0022797 Lotus japonicus HOM05D002640 ORTHO05D003231 5.3e-47 192.6 292 43.2
vmacro08975 Vaccinium macrocarpon HOM05D002640 ORTHO05D003231 5.3e-47 192.6 281 42.7
Actinidia37853 Actinidia chinensis HOM05D002640 ORTHO05D003231 6.9e-47 192.2 297 39.7
Dinv13155 Davidia involucrata HOM05D002640 ORTHO05D003231 6.9e-47 192.2 297 42.8
Lsat_1_v5_gn_8_83860 Lactuca sativa HOM05D002640 ORTHO05D003231 6.9e-47 192.2 296 40.9
HanXRQChr06g0177131 Helianthus annuus HOM05D002640 ORTHO05D003231 9.0e-47 191.8 288 42.0
MBI13_g02373_MAGBIO Magnolia biondii HOM05D002640 ORTHO05D003231 9.0e-47 191.8 291 43.3
Cpa.g.sc1617.1 Carica papaya HOM05D002640 ORTHO05D003231 1.2e-46 191.4 292 42.5
TWI77G0284 Tripterygium wilfordii HOM05D002640 ORTHO05D003231 2.0e-46 190.7 293 43.0
Duzib106G1211 Durio zibethinus HOM05D002640 ORTHO05D003231 3.4e-46 189.9 273 43.2
Lalb_Chr24g0400581 Lupinus albus HOM05D002640 ORTHO05D003231 3.4e-46 189.9 294 44.6
ClCG11G010450 Citrullus lanatus HOM05D002640 ORTHO05D003231 5.9e-46 189.1 293 43.7
Lalb_Chr14g0365421 Lupinus albus HOM05D002640 ORTHO05D003231 5.9e-46 189.1 298 42.6
Manes.08G162401 Manihot esculenta HOM05D002640 ORTHO05D003231 5.9e-46 189.1 280 43.9
VMungo1383G1765 Vigna mungo HOM05D002640 ORTHO05D003231 5.9e-46 189.1 292 42.8
TAR623G0852 Trochodendron aralioides HOM05D002640 ORTHO05D003231 7.6e-46 188.7 297 41.4
Oeu044234.2 Olea europaea HOM05D002640 ORTHO05D003231 1.3e-45 188.0 296 41.9
Duzib114G0695 Durio zibethinus HOM05D002640 ORTHO05D003231 2.2e-45 187.2 273 41.8
Lj2C412G3 Lonicera japonica HOM05D002640 ORTHO05D003231 2.2e-45 187.2 297 41.4
Oeu022996.1 Olea europaea HOM05D002640 ORTHO05D003231 2.2e-45 187.2 296 42.2
Psat0s699g0040 Pisum sativum HOM05D002640 ORTHO05D003231 2.2e-45 187.2 295 42.4
CAN.G128.94 Capsicum annuum HOM05D002640 ORTHO05D003231 6.5e-45 185.7 297 41.1
Ciclev10013566m.g Citrus clementina HOM05D002640 ORTHO05D003231 6.5e-45 185.7 296 40.5
MSTRG.6300 Avicennia marina HOM05D002640 ORTHO05D003231 8.4e-45 185.3 294 41.8
EL10Ac3g07304 Beta vulgaris HOM05D002640 ORTHO05D003231 1.1e-44 184.9 285 42.5
Lsat_1_v5_gn_9_32200 Lactuca sativa HOM05D002640 ORTHO05D003231 1.1e-44 184.9 298 40.6
CsaV3_2G009910 Cucumis sativus L. HOM05D002640 ORTHO05D003231 1.4e-44 184.5 291 42.3
Hund19066 Selenicereus undatus HOM05D002640 ORTHO05D003231 1.9e-44 184.1 289 41.2
Eucgr.K01682 Eucalyptus grandis HOM05D002640 ORTHO05D003231 2.5e-44 183.7 270 42.6
TWI53G2001 Tripterygium wilfordii HOM05D002640 ORTHO05D003231 3.2e-44 183.3 293 42.0
HPP92_011291 Vanilla planifolia HOM05D002640 ORTHO05D003231 3.2e-44 183.3 287 40.1
A07p32820 Brassica napus HOM05D002640 ORTHO05D003231 7.2e-44 182.2 290 41.4
PGSC0003DMG400028197 Solanum tuberosum HOM05D002640 ORTHO05D003231 1.2e-43 181.4 301 38.9
Aa31LG2G2460 Aethionema arabicum HOM05D002640 ORTHO05D003231 1.6e-43 181.0 292 42.1
AUR62018416 Chenopodium quinoa HOM05D002640 ORTHO05D003231 1.6e-43 181.0 285 40.7
Medtr7g088700 Medicago truncatula HOM05D002640 ORTHO05D003231 1.6e-43 181.0 292 41.8
THA.LOC104805690 Tarenaya hassleriana HOM05D002640 ORTHO05D003231 2.1e-43 180.6 299 40.1
A02p13220 Brassica napus HOM05D002640 ORTHO05D003231 2.7e-43 180.3 290 41.0
COL.COLO4_10242 Corchorus olitorius HOM05D002640 ORTHO05D003231 2.7e-43 180.3 294 39.8
BraA07t30909Z Brassica rapa HOM05D002640 ORTHO05D003231 4.6e-43 179.5 292 41.1
QL04p022161 Quercus lobata HOM05D002640 ORTHO05D003231 6.1e-43 179.1 302 39.7
Medtr7g087460 Medicago truncatula HOM05D002640 ORTHO05D003231 7.9e-43 178.7 328 38.4
HanXRQChr10g0298481 Helianthus annuus HOM05D002640 ORTHO05D003231 1.0e-42 178.3 286 40.6
C06p39050 Brassica napus HOM05D002640 ORTHO05D003231 1.3e-42 177.9 290 40.7
Aqoxy1G00051 Aquilegia oxysepala HOM05D002640 ORTHO05D003231 1.8e-42 177.6 298 40.6
BraA02t06378Z Brassica rapa HOM05D002640 ORTHO05D003231 1.8e-42 177.6 292 40.8
Sc19g0007910 Simmondsia chinensis HOM05D002640 ORTHO05D003231 1.8e-42 177.6 287 40.1
C02p17450 Brassica napus HOM05D002640 ORTHO05D003231 2.3e-42 177.2 290 40.7
Solyc10g081020.2 Solanum lycopersicum HOM05D002640 ORTHO05D003231 2.3e-42 177.2 297 38.7
Carub.0002s1117 Capsella rubella HOM05D002640 ORTHO05D003231 3.0e-42 176.8 292 39.7
Migut.J01553 Erythranthe guttata HOM05D002640 ORTHO05D003231 3.9e-42 176.4 293 41.3
Sopen10g031530 Solanum pennellii HOM05D002640 ORTHO05D003231 3.9e-42 176.4 297 38.4
CARHR057100 Cardamine hirsuta HOM05D002640 ORTHO05D003231 6.7e-42 175.6 292 39.7
BolC6t38997H Brassica oleracea HOM05D002640 ORTHO05D003231 8.7e-42 175.3 292 40.4
SGA_v2.0_scaffold66G22308 Striga asiatica HOM05D002640 ORTHO05D003231 8.7e-42 175.3 322 38.8
Peaxi162Scf00601g00007 Petunia axillaris HOM05D002640 ORTHO05D003231 1.1e-41 174.9 299 39.1
BolC2t07860H Brassica oleracea HOM05D002640 ORTHO05D003231 1.5e-41 174.5 292 40.4
Zm00001eb291590 Zea mays HOM05D002640 ORTHO05D003231 1.9e-41 174.1 293 37.5
Nn7g37023 Nelumbo nucifera HOM05D002640 ORTHO05D003231 3.3e-41 173.3 298 39.9
Thhalv10018001m.g Eutrema salsugineum HOM05D002640 ORTHO05D003231 4.3e-41 172.9 290 39.3
PGR142G0829 Punica granatum HOM05D002640 ORTHO05D003231 4.3e-41 172.9 277 39.4
Sp5g20200 Schrenkiella parvula HOM05D002640 ORTHO05D003231 4.3e-41 172.9 290 39.7
AL2G22130 Arabidopsis lyrata HOM05D002640 ORTHO05D003231 7.4e-41 172.2 288 40.3
Nitab4.5_0003225g0040 Nicotiana tabacum HOM05D002640 ORTHO05D003231 1.6e-40 171.0 299 39.8
AT1G65440 Arabidopsis thaliana HOM05D002640 ORTHO05D003231 2.8e-40 170.2 286 39.9
Carub.0002s0163 Capsella rubella HOM05D002640 ORTHO05D003231 1.4e-39 167.9 282 39.0
Migut.J01544 Erythranthe guttata HOM05D002640 ORTHO05D003231 1.8e-39 167.5 323 37.8
ECA247G4078 Erigeron canadensis HOM05D002640 ORTHO05D003231 2.4e-39 167.2 285 37.9
Nitab4.5_0000062g0270 Nicotiana tabacum HOM05D002640 ORTHO05D003231 3.1e-39 166.8 299 39.1
Prupe.8G211800 Prunus persica HOM05D002640 ORTHO05D003231 6.9e-39 165.6 288 39.2
AUR62041298 Chenopodium quinoa HOM05D002640 ORTHO05D003231 9.0e-39 165.2 269 40.1
Ah.04g150530 Amaranthus hybridus HOM05D002640 ORTHO05D003231 1.2e-38 164.9 285 37.5
Ca_08696_v3 Cicer arietinum L. HOM05D002640 ORTHO05D003231 1.2e-38 164.9 294 41.2
PSO339G4261 Papaver somniferum HOM05D002640 ORTHO05D003231 1.2e-38 164.9 231 44.6
PSO384G3455 Papaver somniferum HOM05D002640 ORTHO05D003231 1.2e-38 164.9 232 44.0
ECA236G4010 Erigeron canadensis HOM05D002640 ORTHO05D003231 4.5e-38 162.9 285 38.9
GSVIVG01012377001 Vitis vinifera HOM05D002640 ORTHO05D003231 1.7e-37 161.0 282 39.0
SalBow6G2030 Salvia bowleyana HOM05D002640 ORTHO05D003231 5.0e-37 159.5 215 47.9
Lj9C650G10 Lonicera japonica HOM05D002640 ORTHO05D003231 8.5e-37 158.7 296 37.2
DCAR_020604 Daucus carota HOM05D002640 ORTHO05D003231 5.5e-36 156.0 218 45.0
FAN28G1503 Fragaria x ananassa HOM05D002640 ORTHO05D003231 9.4e-36 155.2 269 40.5
MBI19_g32644_MAGBIO Magnolia biondii HOM05D002640 ORTHO05D003231 9.4e-36 155.2 248 43.1
AL2G12170 Arabidopsis lyrata HOM05D002640 ORTHO05D003231 6.1e-35 152.5 315 34.3
Gohir.A05G396600 Gossypium hirsutum HOM05D002640 ORTHO05D003231 1.4e-34 151.4 300 36.3
MELO3C008653.2 Cucumis melo HOM05D002640 ORTHO05D003231 2.3e-34 150.6 293 38.6
QL04p022175 Quercus lobata HOM05D002640 ORTHO05D003231 2.3e-34 150.6 296 36.8
AT1G63210 Arabidopsis thaliana HOM05D002640 ORTHO05D003231 5.1e-34 149.4 318 34.0
Psat5g224720 Pisum sativum HOM05D002640 ORTHO05D003231 6.7e-34 149.1 296 35.8
Lalb_Chr15g0079261 Lupinus albus HOM05D002640 ORTHO05D003231 8.8e-34 148.7 274 36.5
BcaB05g24114 Brassica carinata HOM05D002640 ORTHO05D003231 2.0e-33 147.5 282 37.2
unitig_21.g20682 Utricularia gibba HOM05D002640 ORTHO05D003231 2.5e-33 147.1 304 36.5
Ca_12390_v3 Cicer arietinum L. HOM05D002640 ORTHO05D003231 4.3e-33 146.4 296 35.5
TPR.G25549 Trifolium pratense HOM05D002640 ORTHO05D003231 6.3e-32 142.5 197 43.7
Glyma.06G312200 Glycine max HOM05D002640 ORTHO05D003231 2.4e-31 140.6 270 36.3
Lj3g0013532 Lotus japonicus HOM05D002640 ORTHO05D003231 4.1e-31 139.8 274 33.6
TPR.G30407 Trifolium pratense HOM05D002640 ORTHO05D003231 6.9e-31 139.0 275 35.6
Dinv13151 Davidia involucrata HOM05D002640 ORTHO05D003231 4.5e-30 136.3 297 35.4
SHI11341 Sapria himalayana HOM05D002640 ORTHO05D003231 7.7e-30 135.6 275 32.4
FAN19G1577 Fragaria x ananassa HOM05D002640 ORTHO05D003231 2.5e-28 130.6 249 38.2
ATR0782G064 Amborella trichopoda HOM05D002640 ORTHO05D003231 9.4e-28 128.6 294 34.4
SEGI_00617 Sequoiadendron giganteum HOM05D002640 ORTHO05D003231 9.4e-28 128.6 289 33.6
SEGI_20723 Sequoiadendron giganteum HOM05D002640 ORTHO05D003231 9.4e-28 128.6 289 33.6
FAN23G1577 Fragaria x ananassa HOM05D002640 ORTHO05D006510 1.6e-27 127.9 213 39.9
Sp2g01330 Schrenkiella parvula HOM05D002640 ORTHO05D003231 2.7e-27 127.1 280 35.7
Thhalv10012314m.g Eutrema salsugineum HOM05D002640 ORTHO05D003231 2.6e-25 120.6 255 35.7
SEGI_15393 Sequoiadendron giganteum HOM05D002640 ORTHO05D003231 2.6e-25 120.6 292 31.8
Phvul.005G013600 Phaseolus vulgaris HOM05D002640 ORTHO05D003231 4.4e-25 119.8 267 31.8
Potri.001G034300 Populus trichocarpa HOM05D002640 ORTHO05D003231 7.4e-25 119.0 301 32.2
VMungo1080G1740 Vigna mungo HOM05D002640 ORTHO05D003231 9.7e-25 118.6 272 31.2
FvH4_1g02480 Fragaria vesca HOM05D002640 ORTHO05D003231 2.8e-24 117.1 254 36.6
RcHm_v2.0_Chr2g0087911 Rosa chinensis HOM05D002640 ORTHO05D003231 6.3e-24 115.9 176 40.9
RcHm_v2.0_Chr2g0087931 Rosa chinensis HOM05D002640 ORTHO05D003231 3.1e-23 113.6 149 44.3
HPP92_011268 Vanilla planifolia HOM05D002640 ORTHO05D003231 1.6e-22 111.3 284 29.2
Carub.0001s4195 Capsella rubella HOM05D002640 ORTHO05D003231 2.0e-22 110.9 258 34.5
Lj1C1081G2 Lonicera japonica HOM05D002640 ORTHO05D003231 5.9e-22 109.4 193 36.8
FAN23G2835 Fragaria x ananassa HOM05D002640 ORTHO05D003231 1.7e-21 107.8 174 41.4
FAN26G2883 Fragaria x ananassa HOM05D002640 ORTHO05D003231 3.8e-21 106.7 136 45.6
Gohir.A12G078700 Gossypium hirsutum HOM05D002640 ORTHO05D020789 8.5e-21 105.5 181 38.1
FAN23G0365 Fragaria x ananassa HOM05D002640 ORTHO05D003231 5.5e-20 102.8 137 43.8
FAN23G1026 Fragaria x ananassa HOM05D002640 ORTHO05D003231 5.5e-20 102.8 137 43.8
Mapoly0025s0106 Marchantia polymorpha HOM05D002640 ORTHO05D003231 9.4e-20 102.1 279 29.7
Psat3g019400 Pisum sativum HOM05D002640 ORTHO05D003231 3.6e-19 100.1 213 36.6
FAN28G2687 Fragaria x ananassa HOM05D002640 ORTHO05D003231 4.7e-19 99.8 130 44.6
FvH4_1g02810 Fragaria vesca HOM05D002640 ORTHO05D003231 1.0e-18 98.6 136 44.9
FAN19G3161 Fragaria x ananassa HOM05D002640 ORTHO05D003231 1.4e-18 98.2 136 44.9
Gohir.A11G138500 Gossypium hirsutum HOM05D002640 ORTHO05D020789 1.8e-18 97.8 138 40.6
AagrBONN_evm.TU.Sc2ySwM_228.4939 Anthoceros agrestis HOM05D002640 ORTHO05D003231 5.2e-18 96.3 281 30.6
Pp3c5_23930 Physcomitrium patens HOM05D002640 ORTHO05D003231 5.7e-17 92.8 281 29.2
Pp3c5_24480 Physcomitrium patens HOM05D002640 ORTHO05D003231 5.7e-17 92.8 277 30.3
MBI18_g13239_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D000011 1.7e-16 91.3 142 43.7
SMO364G0195 Selaginella moellendorffii HOM05D002640 ORTHO05D003231 1.7e-16 91.3 286 28.3
CDE08G0416 Ceratophyllum demersum HOM05D002640 ORTHO05D003231 4.8e-16 89.7 170 34.7
CBR_g876 Chara braunii HOM05D002640 ORTHO05D003231 3.1e-15 87.0 270 27.4
Actinidia15138 Actinidia chinensis HOM05D002640 ORTHO05D003231 1.9e-12 77.8 70 51.4
Actinidia15141 Actinidia chinensis HOM05D002640 ORTHO05D003231 1.2e-11 75.1 71 52.1
DCAR_013529 Daucus carota HOM05D002640 ORTHO05D003231 1.2e-11 75.1 129 40.3
Gohir.A11G197584 Gossypium hirsutum HOM05D002640 ORTHO05D003231 1.6e-11 74.7 80 48.8
CDE08G1380 Ceratophyllum demersum HOM05D002640 ORTHO05D003231 3.4e-09 67.0 68 50.0
ECA236G1109 Erigeron canadensis HOM05D002640 ORTHO05D003231 5.7e-09 66.2 99 38.4
Lsat_1_v5_gn_4_43821 Lactuca sativa HOM05D002640 ORTHO05D003231 5.7e-09 66.2 140 34.3
Hund00908 Selenicereus undatus HOM05D002640 ORTHO05D003231 2.2e-08 64.3 104 35.6
QL01p002119 Quercus lobata HOM05D002640 ORTHO05D003231 8.3e-08 62.4 96 38.5
Hund08680 Selenicereus undatus HOM05D002640 ORTHO05D003231 8.3e-08 62.4 100 35.0
CDE09G1137 Ceratophyllum demersum HOM05D002640 ORTHO05D003231 9.1e-07 58.9 137 30.7
MBI02_g14198_MAGBIO Magnolia biondii HOM05D002640 ORTHO05D003231 9.1e-07 58.9 91 41.8
Gohir.A10G108316 Gossypium hirsutum HOM05D036187 ORTHO05D020789 1.2e-06 58.5 105 36.2


User provided reference genes

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