Gene: AT1G63210

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G63210
  • Transcript Identifier AT1G63210.1
  • Gene Type Coding gene
  • Location Chr1 : 23443688-23447354 : positive

Gene Family Information

  • ID HOM05D002640
  • #Genes/#Species 260/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G63210.1
  • uniprot Q9CAM1

Descriptions

  • Description Transcription elongation factor Spt6
  • Computational description Transcription elongation factor Spt6; FUNCTIONS IN: transcription elongation regulator activity, hydrolase activity, acting on ester bonds, RNA binding; INVOLVED IN: regulation of transcription from RNA polymerase II promoter, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; EXPRESSED IN: sperm cell, flower, cultured cell; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), SH2 motif (InterPro:IPR000980), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Transcription elongation factor Spt6 (InterPro:IPR017072); BEST Arabidopsis thaliana protein match is: global transcription factor group B1 (TAIR:AT1G65440.2); Has 3998 Blast hits to 3944 proteins in 1964 species: Archae - 20; Bacteria - 3376; Metazoa - 203; Fungi - 157; Plants - 65; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006368
IBA
Gene Ontologytranscription elongation from RNA polymerase II promoter1
GO:0032968
IEA
GOA Databasepositive regulation of transcription elongation from RNA polymerase II promoter
GO:0032968
IBA
Gene Ontologypositive regulation of transcription elongation from RNA polymerase II promoter1
GO:0032968
IEA
InterPropositive regulation of transcription elongation from RNA polymerase II promoter
GO:0006139
IEA
GOA Databasenucleobase-containing compound metabolic process
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0034728
IBA
Gene Ontologynucleosome organization1
GO:0042789
IBA
Gene OntologymRNA transcription by RNA polymerase II1
GO:0050684
IBA
Gene Ontologyregulation of mRNA processing1
GO:0070827
IBA
Gene Ontologychromatin maintenance1
GO:0009793
IMP
Gene Ontologyembryo development ending in seed dormancy2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031491
IBA
Gene Ontologynucleosome binding1
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0042393
IBA
Gene Ontologyhistone binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0035327
IBA
Gene Ontologytranscriptionally active chromatin1
GO:0008023
IBA
Gene Ontologytranscription elongation factor complex1
GO:0005829
HDA
Gene Ontologycytosol3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035018 Spt6, SH2 domain, C terminus
IPR032706 Transcription elongation factor Spt6, helix-hairpin-helix motif
IPR028231 Transcription elongation factor Spt6, YqgF domain
IPR035420 Spt6, SH2 domain
IPR022967 RNA-binding domain, S1
IPR036860 SH2 domain superfamily
IPR012337 Ribonuclease H-like superfamily
IPR010994 RuvA domain 2-like
IPR023319 Tex-like protein, HTH domain superfamily
IPR042066 Spt6, Death-like domain
IPR006641 YqgF/RNase H-like domain
IPR035019 Spt6, SH2 domain, N terminus
IPR041692 HHH domain 9
IPR037027 YqgF/RNase H-like domain superfamily
IPR017072 Transcription elongation factor Spt6
IPR023323 Tex-like domain superfamily
IPR012340 Nucleic acid-binding, OB-fold
Mapman id Description
15.3.5.4.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT6-IWS1 transcription elongation complex.component SPT6