Gene: SGA_v2.0_scaffold66G22308

General Information

Structural Information

  • Species Striga asiatica
  • Gene Identifier SGA_v2.0_scaffold66G22308
  • Transcript Identifier SGA_v2.0_scaffold66T22308
  • Gene Type Coding gene
  • Location scaffold66 : 412384-423038 : positive

Gene Family Information

  • ID HOM05D002640
  • #Genes/#Species 260/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

Descriptions

  • product Transcription elongation factor SPT6-like protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032968
IEA
InterPropositive regulation of transcription elongation from RNA polymerase II promoter
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT1G63210

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G65440

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT1G65440
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G65440

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017072 Transcription elongation factor Spt6
IPR028088 Helix-turn-helix DNA-binding domain of Spt6
IPR023323 Tex-like domain superfamily
IPR002715 Nascent polypeptide-associated complex NAC domain
IPR044034 Nascent polypeptide-associated complex subunit alpha-like, UBA domain
IPR035420 Spt6, SH2 domain
IPR010994 RuvA domain 2-like
IPR035018 Spt6, SH2 domain, C terminus
IPR038187 NAC A/B domain superfamily
IPR035019 Spt6, SH2 domain, N terminus
IPR032706 Transcription elongation factor Spt6, helix-hairpin-helix motif
IPR023319 Tex-like protein, HTH domain superfamily
IPR012340 Nucleic acid-binding, OB-fold
IPR036860 SH2 domain superfamily
IPR022967 RNA-binding domain, S1
IPR037027 YqgF/RNase H-like domain superfamily
IPR012337 Ribonuclease H-like superfamily
IPR042066 Spt6, Death-like domain
IPR028231 Transcription elongation factor Spt6, YqgF domain
IPR028083 Spt6 acidic, N-terminal domain
IPR006641 YqgF/RNase H-like domain
IPR041692 HHH domain 9
Mapman id Description
15.3.5.4.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT6-IWS1 transcription elongation complex.component SPT6
19.1.2.1.1 Protein homeostasis.protein quality control.ribosome-associated chaperone activities.NAC chaperone heterodimer.subunit alpha