Gene: PGSC0003DMG400028197

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400028197
  • Transcript Identifier PGSC0003DMT400072479
  • Gene Type Coding gene
  • Location ST4.03ch10 : 56885441-56894884 : positive

Gene Family Information

  • ID HOM05D002640
  • #Genes/#Species 260/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37480162
  • id PGSC0003DMG400028197.v4.03
  • uniprot M1CQD2

Descriptions

  • Description Suppressor of ty
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT1G63210
GO:0032968
IBA
IEA
GOA Databasepositive regulation of transcription elongation from RNA polymerase II promoter
GO:0032968
IEA
InterPropositive regulation of transcription elongation from RNA polymerase II promoter
GO:0006368
IBA
GOA Databasetranscription elongation from RNA polymerase II promoter
GO:0050684
IBA
GOA Databaseregulation of mRNA processing
GO:0042789
IBA
GOA DatabasemRNA transcription by RNA polymerase II
GO:0070827
IBA
GOA Databasechromatin maintenance
GO:0034728
IBA
GOA Databasenucleosome organization
GO:0006139
IEA
GOA Databasenucleobase-containing compound metabolic process
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G65440
GO:0031491
IBA
GOA Databasenucleosome binding
GO:0042393
IBA
GOA Databasehistone binding
GO:0003676
IEA
GOA Databasenucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008023
IBA
GOA Databasetranscription elongation factor complex
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G65440
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT1G65440
GO:0035327
IBA
GOA Databasetranscriptionally active chromatin
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017072 Transcription elongation factor Spt6
IPR028231 Transcription elongation factor Spt6, YqgF domain
IPR012340 Nucleic acid-binding, OB-fold
IPR028083 Spt6 acidic, N-terminal domain
IPR010994 RuvA domain 2-like
IPR032706 Transcription elongation factor Spt6, helix-hairpin-helix motif
IPR036860 SH2 domain superfamily
IPR042066 Spt6, Death-like domain
IPR012337 Ribonuclease H-like superfamily
IPR035420 Spt6, SH2 domain
IPR023319 Tex-like protein, HTH domain superfamily
IPR006641 YqgF/RNase H-like domain
IPR023323 Tex-like domain superfamily
IPR035019 Spt6, SH2 domain, N terminus
IPR037027 YqgF/RNase H-like domain superfamily
IPR022967 RNA-binding domain, S1
IPR041692 HHH domain 9
IPR035018 Spt6, SH2 domain, C terminus
Mapman id Description
15.3.5.4.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT6-IWS1 transcription elongation complex.component SPT6