Gene: Potri.001G034300

General Information

Structural Information

  • Species Populus trichocarpa
  • Gene Identifier Potri.001G034300
  • Transcript Identifier Potri.001G034300.1
  • Gene Type Coding gene
  • Location Chr01 : 2531822-2542436 : positive

Gene Family Information

  • ID HOM05D002640
  • #Genes/#Species 260/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Potri.001G034300.v4.1
  • pacid 42791805
  • synonym POPTR_0001s07150

Descriptions

  • Description K11292 - transcription elongation factor SPT6 (SUPT6H, SPT6)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032968
IEA
InterPropositive regulation of transcription elongation from RNA polymerase II promoter
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR028231 Transcription elongation factor Spt6, YqgF domain
IPR028083 Spt6 acidic, N-terminal domain
IPR017072 Transcription elongation factor Spt6
IPR037027 YqgF/RNase H-like domain superfamily
IPR036860 SH2 domain superfamily
IPR010994 RuvA domain 2-like
IPR035019 Spt6, SH2 domain, N terminus
IPR041692 HHH domain 9
IPR006641 YqgF/RNase H-like domain
IPR022967 RNA-binding domain, S1
IPR012337 Ribonuclease H-like superfamily
IPR042066 Spt6, Death-like domain
IPR035420 Spt6, SH2 domain
IPR035018 Spt6, SH2 domain, C terminus
IPR032706 Transcription elongation factor Spt6, helix-hairpin-helix motif
IPR012340 Nucleic acid-binding, OB-fold
IPR023319 Tex-like protein, HTH domain superfamily
IPR003029 S1 domain
IPR023323 Tex-like domain superfamily
Mapman id Description
15.3.5.4.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT6-IWS1 transcription elongation complex.component SPT6