Gene: CSS0028254
General Information
Structural Information
- Species Camellia sinensis var. sinensis
- Gene Identifier CSS0028254
- Transcript Identifier CSS0028254.1
- Gene Type Coding gene
- Location Contig135 : 179751-190009 : negative
Gene Family Information
- ID HOM05D002640
- #Genes/#Species 260/99
- Phylogenetic origin
- ID ORTHO05D003231
- #Genes/#Species 236/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid CSS0028254.1
Descriptions
- Description PREDICTED: transcription elongation factor SPT6 [Vitis vinifera]
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0006139 | IEA | InterPro | nucleobase-containing compound metabolic process | |
GO:0032968 | IEA | InterPro | positive regulation of transcription elongation from RNA polymerase II promoter | |
GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT1G63210 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003677 | IEA | InterPro | DNA binding | |
GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G65440 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT1G65440 |
GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G65440 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR037027 | YqgF/RNase H-like domain superfamily |
IPR042066 | Spt6, Death-like domain |
IPR036860 | SH2 domain superfamily |
IPR017072 | Transcription elongation factor Spt6 |
IPR028231 | Transcription elongation factor Spt6, YqgF domain |
IPR032706 | Transcription elongation factor Spt6, helix-hairpin-helix motif |
IPR023323 | Tex-like domain superfamily |
IPR012340 | Nucleic acid-binding, OB-fold |
IPR006641 | YqgF/RNase H-like domain |
IPR035018 | Spt6, SH2 domain, C terminus |
IPR035420 | Spt6, SH2 domain |
IPR023319 | Tex-like protein, HTH domain superfamily |
IPR012337 | Ribonuclease H-like superfamily |
IPR022967 | RNA-binding domain, S1 |
IPR010994 | RuvA domain 2-like |
IPR028088 | Helix-turn-helix DNA-binding domain of Spt6 |
IPR041692 | HHH domain 9 |
IPR035019 | Spt6, SH2 domain, N terminus |
IPR028083 | Spt6 acidic, N-terminal domain |
Mapman id | Description |
---|---|
15.3.5.4.1 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT6-IWS1 transcription elongation complex.component SPT6 |